RNA id: TU94471



Basic Information


Item Value
RNA id TU94471
length 608
lncRNA type read_through
GC content 0.44
exon number 2
gene id LOC120562328
representative False

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 4426306 ~ 4434969 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CATGATTGTTGCTAGACTGAGAAATCCATCCCCTAGcaagctagctagttaacttGCCAGACTGCTGGACACTAAATGTGTAGAAAAGGCCCCAAAGTTATGTTGGTGTTGTAATTGTTTGGTACAGTTGACcatattgtgttttgtgtctcccGTTTGCTCTTGTTTATTCAGTGCTTGTAACAGAGTGGCCAAAGCGTGTGCTGATTGGTATATTAGAGGTGACGTCACACAGTTAATAAGCAGTAAGATAGTTAGTCGGTCAGTTGTACTGTAGTTGTGAGCAGCATCTTGCTTCAGAGTGTGCGTAAATGAGAAGAAAACCACACTCGCACTCACATGTACATAAAGCGAAgagaaagaaataaacacaaagGAACATCTCTCAGCTCTTCATTCATTTATGCTCTGGATATTTGGCCTTAAGTTGTGTTCTGGCCGACACACCTGCATGAACCTAGTGATAACCCTGTAACTAGCACCTAGACTGAGCATCTACCCCTTATCTACACTACATTGATGGTCCTTCGAGCCGGATCACTGGGTTTACGTCAGAGATGGAACTACATCCAGAGTATGATGCTAGTGGTGCACGCCCAAAACGGCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU94468 lncRNA downstream 23453 4408840 ~ 4409043 (-) True G70572
TU94430 lncRNA downstream 73678 4357980 ~ 4358818 (-) True G70538
TU94422 lncRNA downstream 134389 4297761 ~ 4298107 (-) True G70530
XR_005639873.1 lncRNA downstream 145853 4286172 ~ 4286643 (-) True LOC120562918
TU94398 lncRNA downstream 277385 4154793 ~ 4155111 (-) True G70515
TU94514 lncRNA upstream 83358 4517132 ~ 4518554 (-) True G70613
XR_005639724.1 lncRNA upstream 180050 4613824 ~ 4615309 (-) True LOC120562256
XR_005639728.1 lncRNA upstream 233465 4667239 ~ 4668215 (-) True LOC120562259
TU94564 lncRNA upstream 233507 4667281 ~ 4667661 (-) False LOC120562259
TU94580 lncRNA upstream 290343 4724117 ~ 4724379 (-) True G70669
XM_039807104.1 mRNA downstream 221052 4207531 ~ 4211444 (-) True id4
XM_039807354.1 mRNA downstream 354685 4073327 ~ 4077811 (-) False eny2
XM_039806963.1 mRNA upstream 12008 4445782 ~ 4462631 (-) False ptpn2a
XM_039806962.1 mRNA upstream 12008 4445782 ~ 4462630 (-) True ptpn2a
XM_039805873.1 mRNA upstream 177611 4611385 ~ 4612551 (-) True LOC120562255
XM_039806810.1 mRNA upstream 468722 4902496 ~ 4911928 (-) True fam210aa
XM_039806021.1 mRNA upstream 673038 5106812 ~ 5156328 (-) True LOC120562332
TU94368 other downstream 354717 4072324 ~ 4077779 (-) False eny2
XR_005639743.1 other upstream 722158 5155932 ~ 5156330 (-) False LOC120562332
XR_005639715.1 other upstream 1382471 5816245 ~ 5817189 (-) False LOC120562243
TU95121 other upstream 3063289 7497063 ~ 7500153 (-) True G71108
XR_005639915.1 other upstream 3141591 7575365 ~ 7609859 (-) False enpp2
TU95317 other upstream 3362399 7796173 ~ 7807092 (-) True G71261

Expression Profile