RNA id: XM_039808370.1


Basic Information

Item Value
RNA id XM_039808370.1
length 1404
RNA type mRNA
GC content 0.49
exon number 7
gene id elmo3
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 36684992 ~ 36713691 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGGGGAGGTTCATGTGATTAGACAGTGTGAACCAGGAGGGAGTCTTTGACTTTAAACTGATAATAGAAGTAGGCGGGAAAACACATGAATGGAGCAGAGGTGCGTGTGGGTGTGGCTTAGAAGGAGTAATGCATGAAAGAGTGGAGGCGAGGAAGGGAATTACTCTTCCTGATTGAACACCCAGCAAGCTCCACGtgttatctatctatccatgGACCATGTTCTGGCCTACTGGAGCATTTTCTTCATGTGGGTTTTAAAGCTCAAAGGTGATGCAGGTGGTGAGGGAGCAGATAACCAGGACACTGTCCAGTAAGCCCACCTCCCTGGAGCTCTTCAAGAACAAAGTCAACGCACTCAACTACAGCGAGATCCTCAAACTGCGGCAGACAGAACGGCTGCACCAGGAAGAGACTCTGGCTCCGCCCGTACTtgAGCTCAAAGAGCGCCTGAAGCCAGAGCTGCTGGAGTTGATCCGCCAGCAGAGACTCAACAGGCTGTGTCAAGGAACAATGTTCAAGAAGATTAGCAGCCGACGCAGACAGGatAAACTGTGGTACTGCCGCTTGTCGCCCAATCACAAAATGCTTCACTACGGTGATGTGGACGAAGACCTGGACAACCCACCAATCGAAACACTGCAAGAGAAGATTCCAGTAGCAGATATCAAAGGCTTGCTGACAGGAAAAGACTGTCCTCACATGAAGGAGAACAAAGGCAAACAGAACAAGGAGGCGCTGGACCTGGCATTTAGCATCACATATGATGTAGAAGAGTACAGCCTGAACTTCATCGCCCCCTCCAGAACTGATTTCTGCCTGTGGACAGATGGACTGAACGTTCTCCTGGGCCGCGAGATGAGCAGTGAATCCATGCGCAGCGAGCTGGAGATCCTGCTCTCCATGGAGATTAAGCTCCGCCTCCTGGACCTCGAGAACGTTTCCATACCCGACAGCGCGCCGGTCGTTCCCAAACCACCCAGCAACTACAACTTCTGCTACGACTTCAGCCAGACCGAGCAGTAGAGTGCGTGCACTCGCTGTAGTGCAAGTAGGCCGTGtgaatgtgtaaatatatattgtgtgtgtgtgtgtgtgtgtgtggggatgtCTGAAATAAGAGGCCTGTGTGTATGGTGAAACCTGACGTGTGCATCCATGCACTTATTCCTATAACACAGATTTATAACAATATTTGTTCTTCATGGTCTTCTACATCCAAGTGAGACAGTTGAACAGGAGAAAACCTGTGGAAACTACACTAGTGTTTGTGGGGGTAATCTGCTACCAAATGGCTGTCGACTGTACTAAATGCTGCAGAGAAATATCTCCAGTTGGTCCCTCCATTCATGATTTCTCCTCACAGCACTACAAACTTTTAACACAGCTCCAAAAACCACAAAA

Function

GO:

id name namespace
GO:0006909 phagocytosis biological_process
GO:0005856 cytoskeleton cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121693 lncRNA downstream 36305 36636576 ~ 36648687 (-) True G90422
TU121618 lncRNA downstream 153000 36530971 ~ 36531992 (-) True G90360
TU121642 lncRNA downstream 167065 36516003 ~ 36517927 (-) False G90380
TU121398 lncRNA downstream 576731 36106593 ~ 36108261 (-) True G90181
TU121357 lncRNA downstream 890746 35794030 ~ 35794246 (-) True G90144
XR_005640037.1 lncRNA upstream 98862 36788789 ~ 36831578 (-) True LOC120563961
TU121720 lncRNA upstream 108834 36798761 ~ 36800604 (-) False LOC120563961
TU121733 lncRNA upstream 156896 36846823 ~ 36852156 (-) True tigara
XR_005639995.1 lncRNA upstream 395200 37085127 ~ 37088496 (-) True LOC120563667
TU121769 lncRNA upstream 408967 37098894 ~ 37099191 (-) True G90489
XM_039810066.1 mRNA downstream 163029 36518250 ~ 36521963 (-) False LOC120564801
XM_039808977.1 mRNA downstream 172694 36497369 ~ 36512298 (-) True rspry1
XM_039808978.1 mRNA downstream 172707 36497369 ~ 36512285 (-) False rspry1
XM_039808937.1 mRNA downstream 189960 36485748 ~ 36495032 (-) True LOC120564168
XM_039808511.1 mRNA upstream 26133 36716060 ~ 36725583 (-) False e2f4
XM_039808510.1 mRNA upstream 26134 36716061 ~ 36725583 (-) True e2f4
XM_039809721.1 mRNA upstream 153626 36843553 ~ 36852641 (-) False tigara
XM_039808013.1 mRNA upstream 169068 36858995 ~ 36880639 (-) True ccnd2a
XM_039809866.1 mRNA upstream 1061646 37751573 ~ 37768051 (-) True mlycd
TU121645 other downstream 164214 36518240 ~ 36520778 (-) True LOC120564801
TU121644 other downstream 170084 36512962 ~ 36514908 (-) True G90380
TU121363 other downstream 817681 35867013 ~ 35867311 (-) True G90150
TU121230 other downstream 1513309 35144389 ~ 35171683 (-) True G90055
TU121058 other downstream 2006891 34676243 ~ 34678101 (-) True G89928
TU121849 other upstream 1120427 37810354 ~ 37815552 (-) True hsbp1b
TU122135 other upstream 1755048 38444975 ~ 38449275 (-) False ada2a
XR_005640066.1 other upstream 1827252 38517179 ~ 38528723 (-) False atp6v1e1a
unassigned_transcript_384 other upstream 2186628 38876555 ~ 38876626 (-) True trnaq-uug_3
TU122513 other upstream 2971641 39661568 ~ 39680139 (-) True G91021

Expression Profile