RNA id: XM_039808511.1


Basic Information

Item Value
RNA id XM_039808511.1
length 2098
RNA type mRNA
GC content 0.46
exon number 11
gene id e2f4
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 36716060 ~ 36725583 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGCTGTACCCAACAATGCGTTGTTGCAGGGCATTGAACCCGTTGGTACAGAGCTACAGCGGTTTCCCTTTGTCGGCTGCAGACACGTTGGCGGTGCGACAGAAACGACGTATCTATGATATCACTAATGTTTTGGAGGGAATTGGACTGATCGAGAAGAAGTCCAAGAACAGCATCCAGTGGAAGGGTGTAGGTCCAGGATGTAACACCAGAGAGATCGCCGATAAGCTAATTGATCTGAAGGCCGAGCTAGATGACCTGGCTCTCAGGGAAAACGAGCTGGACCAGCAGAGAGTCTGGGTCCAGCAGAGCATCAAGAATGTCACTGACGACTCCAACAACAGCCCTATGGCATATATAAAACATGAAGACCTCTGTGGAGCTTTCAAAGGTGACACACTCCTTGCAATCCGGGCTCCCATTGGCACACAACTAGAGGTCCCCATACCAGAAGCTGTCCTCAACGGACAGAGGAAATACCAGATCCGTCTCAAGAGTGCATCTGGGCCCATTGAGGTTTTGCTGGTCAATAAGGACCCATCCAGTGCCTCTCCTGTTGTTTTGCCCGTCCCTCCTCCAGATGACATCCTTCAAAGCCTCCCAGCAACGACGCCTACCTCTCATCCGTCCACTGCTGCCTCCCAGGTCTCCAAAGCAGCAACGTCTACAAAACCTGGTCCTGCCACGACGTCGGCTCCAGCAGCCAACCAGACTGCCTCACTGACAGATACACCTGCTGCAGTTACCCAGCAACTACAGTCTTCTGCCTCGTTGGATGGGTCTGCGTCTTCATCTGCCTCTGCAGTATTTGAACCAATGAAGTCAAATCCCTCTGAATTGCTGGACTTCCCCAAAGAGCTCTCTGAAATGTTTGATCCAACAAAAGAGATCATGAGTGGAGACCTTTTGGAAGACTTGATGTCATCAGAAGTGTTCTCGCCTCTCCTGCGTCTGTCCCCTCCACCCAGCGACCACGACTACATATACAACCTGGATGAGACAGAAGGCCTTTGTGACCTCTTTGACGTCCCCATTCTCAACCTCTGACCCCTGCGACTGTTGTCAGAGTGAGAAAAGGTTCCCCAAACGTGCTTATCTACCTTCATTTTCTCCACGTTTTTGAAGGTGAGAAGAGGTGCAAGAAAGCCAACATGATCTGAAGAGCGTTGACGGACATCTCTGCACTGACACGGTGAGCTCAGCCGGAGCTCCGTCAGACAGTAGCTCCGTGTACAGCCTCTTGAGGGAATACAGGCTAGaacaaaacattttacacaCTGCTTTTCCAAGGACACAAAGtcaaaagaaatgacaaataattatattttttagatTGTTATGTAAAGTGTTTGTGTATCAGCTTTCCTGTGTGCTTGTGAGCGAACGTGAGTAGGCAATACTTTGcttgtgcgtctgtgtgtgcgcttgaGTTTTGTATTGAACCCTTTTTTTAACTTGAGgcagaggtgggggggggggagagaaaagagaaagcctTTTCCTATCAGGTAAATAGTCATTGCGTTAAGAGACCAGTCTTTGTCACCCAGCAGCTGCTCGCGCATGGCTTGAATGAGTCCAAACACAGCTGGTTAAATATGCACTGTCCTCATGTACATAgagaatatatattttgtattaccAGCACCCAAGACTATTGTTTAATAATTAACTGCATTTGTAACCCAGGCAGAGCAATAGTTTGCaaataaacaaactaaataaataaataaataataaaggttCCAGACTCATATAATCACATTGTATGAATGAAGTGATTTGTTTCAGATAATAGGAATTGGTCTTAATCAAACCTCTCAGTGTTGGAAGTATTTTTTGTGAACCAGTTAGAGAAAGAGGATCCTATTGTTGAGTAACTGAAACCAATTGATGTTGTGACATAAAGAGCCAAGGACCAAAACAATGcattgggggagggggggggggcccttAAAAAGGAATTCTACCTTTTTACATGGAACACATTTTAGGTCAACaatagggctgtgtattggcaagaatctggcgatgcgatacgtatcacgatacacgGGTCATGATTCaatatatcacaatatatttcaatatattggga

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121693 lncRNA downstream 67373 36636576 ~ 36648687 (-) True G90422
TU121618 lncRNA downstream 184068 36530971 ~ 36531992 (-) True G90360
TU121642 lncRNA downstream 198133 36516003 ~ 36517927 (-) False G90380
TU121398 lncRNA downstream 607799 36106593 ~ 36108261 (-) True G90181
TU121357 lncRNA downstream 921814 35794030 ~ 35794246 (-) True G90144
XR_005640037.1 lncRNA upstream 63206 36788789 ~ 36831578 (-) True LOC120563961
TU121720 lncRNA upstream 73178 36798761 ~ 36800604 (-) False LOC120563961
TU121733 lncRNA upstream 121240 36846823 ~ 36852156 (-) True tigara
XR_005639995.1 lncRNA upstream 359544 37085127 ~ 37088496 (-) True LOC120563667
TU121769 lncRNA upstream 373311 37098894 ~ 37099191 (-) True G90489
XM_039808367.1 mRNA downstream 2369 36684992 ~ 36713691 (-) True elmo3
XM_039808368.1 mRNA downstream 4805 36684992 ~ 36711255 (-) False elmo3
XM_039808369.1 mRNA downstream 24773 36684992 ~ 36691287 (-) False elmo3
XM_039808370.1 mRNA downstream 26133 36684992 ~ 36689927 (-) False elmo3
XM_039810066.1 mRNA downstream 194097 36518250 ~ 36521963 (-) False LOC120564801
XM_039809721.1 mRNA upstream 117970 36843553 ~ 36852641 (-) False tigara
XM_039808013.1 mRNA upstream 133412 36858995 ~ 36880639 (-) True ccnd2a
XM_039809866.1 mRNA upstream 1025990 37751573 ~ 37768051 (-) True mlycd
XM_039808259.1 mRNA upstream 1084840 37810423 ~ 37815548 (-) False hsbp1b
XM_039808363.1 mRNA upstream 1716284 38441867 ~ 38448666 (-) True ada2a
TU121645 other downstream 195282 36518240 ~ 36520778 (-) True LOC120564801
TU121644 other downstream 201152 36512962 ~ 36514908 (-) True G90380
TU121363 other downstream 848749 35867013 ~ 35867311 (-) True G90150
TU121230 other downstream 1544377 35144389 ~ 35171683 (-) True G90055
TU121058 other downstream 2037959 34676243 ~ 34678101 (-) True G89928
TU121849 other upstream 1084771 37810354 ~ 37815552 (-) True hsbp1b
TU122135 other upstream 1719392 38444975 ~ 38449275 (-) False ada2a
XR_005640066.1 other upstream 1791596 38517179 ~ 38528723 (-) False atp6v1e1a
unassigned_transcript_384 other upstream 2150972 38876555 ~ 38876626 (-) True trnaq-uug_3
TU122513 other upstream 2935985 39661568 ~ 39680139 (-) True G91021

Expression Profile