RNA id: TCONS_00006596


Basic Information

Item Value
RNA id TCONS_00006596
length 859
RNA type mRNA
GC content 0.40
exon number 5
gene id XLOC_003367
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 16040517 ~ 16064291 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTGTAGTCACATGACACTTGTCAGGCTGAAGTCACATGGTTTGTGTTTGCAGTCACTTCAGAACAGCACAAATTTCTACACACAGTTATGATGAAAGTGTTTCATGCTTCCTTAGTGAAATACTGAAAACTACATAGGACCATTTAATTCTGAACAGGCAGTGAAAATATGGAAATACCAGCCATAAATCTGAAGGCCATTTTGTTGGTTCACTGGATACTGACAGTTTGGGCATGCTTACTTTCCTGGCTCCCAGCTTCTTATgtgttggggaacttcagtgttCTTGCAGTGGGAGTGTGGGCCATAGCACAGAGAGACTCCATAGATGCTGTTTTATTGTTCTTGATCGGACTGGCAGTGACAATCTTGACTGATATTGTTCATTTTGGGATCTACTATGCAGCAGCTGAACTCCTATACGAGAGATCCACACGGGACCTGTTCCGCTTTAGTGGAGGCATGGCCATCCTGAGCCTCTTGCTCAAACCTGTCTCCTGCTTCTTTGTCTACCAAATGTACCGTGAGCGAGGGGGTGAATACAATGTCAATTTTGgttTCCCATCAATATCTCGAAACAGAGATGCCTACCAGTCTATTGACCACAACGATCAATCTGGAAGCTCTGCCAACCCCTTTGGCCAAGCGGAAGATGGCAAATCTGGCACTCGTTCCtactaaacatttattaaaaaatatatatagcaaaaTGTTTTGCAACCCAGGCTAAATGTGAATTTTTGCTTGGTTCATgatttgtgtatgtttttgtttaatttgtatgcctatttattattattatcattattattataaataatagtattaaatataatgTTGAAGCATGAAGGAAAACAA

Function

GO:

id name namespace
GO:0008217 regulation of blood pressure biological_process
GO:0038166 angiotensin-activated signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050309-11 Predicted to be involved in regulation of blood pressure. Predicted to act upstream of or within angiotensin-activated signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in notochord. Orthologous to human AGTRAP (angiotensin II receptor associated protein).

Ensembl:

ensembl_id ENSDART00000111284

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006595 lncRNA upstream 64669 15972519 ~ 15975848 (+) True XLOC_003366
TCONS_00006585 lncRNA upstream 239121 15799383 ~ 15801396 (+) True XLOC_003363
TCONS_00006584 lncRNA upstream 261266 15776072 ~ 15779251 (+) True XLOC_003362
TCONS_00006583 lncRNA upstream 263297 15776072 ~ 15777220 (+) False XLOC_003362
TCONS_00006581 lncRNA upstream 557494 15480734 ~ 15483023 (+) True XLOC_003360
TCONS_00008579 lncRNA downstream 1030165 17093078 ~ 17170177 (+) True XLOC_003374
TCONS_00006611 lncRNA downstream 1074935 17137848 ~ 17141076 (+) False XLOC_003375
TCONS_00006612 lncRNA downstream 1074939 17137852 ~ 17141052 (+) False XLOC_003375
TCONS_00006613 lncRNA downstream 1074939 17137852 ~ 17141887 (+) False XLOC_003375
TCONS_00006614 lncRNA downstream 1075527 17138440 ~ 17141882 (+) False XLOC_003375
TCONS_00006593 mRNA upstream 27403 15931188 ~ 16013114 (+) False XLOC_003366
TCONS_00006594 mRNA upstream 34532 15931222 ~ 16005985 (+) False XLOC_003366
TCONS_00006592 mRNA upstream 124729 15890984 ~ 15915788 (+) True XLOC_003365
TCONS_00006590 mRNA upstream 129822 15878412 ~ 15910695 (+) False XLOC_003365
TCONS_00006588 mRNA upstream 138077 15878366 ~ 15902440 (+) False XLOC_003365
TCONS_00006601 mRNA downstream 74389 16137302 ~ 16141536 (+) False XLOC_003370
TCONS_00006602 mRNA downstream 74858 16137771 ~ 16140049 (+) False XLOC_003370
TCONS_00006603 mRNA downstream 75152 16138065 ~ 16140049 (+) True XLOC_003370
TCONS_00006604 mRNA downstream 89403 16152316 ~ 16166040 (+) False XLOC_003371
TCONS_00006605 mRNA downstream 90294 16153207 ~ 16166705 (+) False XLOC_003371
TCONS_00006591 other upstream 138322 15886970 ~ 15902195 (+) False XLOC_003365
TCONS_00006578 other upstream 1021993 15017185 ~ 15018524 (+) False XLOC_003358
TCONS_00006571 other upstream 1401457 14431273 ~ 14639060 (+) False XLOC_003353
TCONS_00006572 other upstream 1599691 14431365 ~ 14440826 (+) False XLOC_003353
TCONS_00006565 other upstream 1699734 14333441 ~ 14340783 (+) False XLOC_003351
TCONS_00006599 other downstream 7525 16070438 ~ 16083608 (+) True XLOC_003368
TCONS_00006600 other downstream 59873 16122786 ~ 16123082 (+) True XLOC_003369
TCONS_00006621 other downstream 1265652 17328565 ~ 17328681 (+) True XLOC_003376
TCONS_00006622 other downstream 1377678 17440591 ~ 17497093 (+) False XLOC_003377
TCONS_00006623 other downstream 1378394 17441307 ~ 17494543 (+) False XLOC_003377

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000058_00435196_00437830.mRNA False 1274 mRNA 0.43 4 CI01000058 434913 ~ 438410 (+)