RNA id: TCONS_00067340


Basic Information

Item Value
RNA id TCONS_00067340
length 1582
RNA type mRNA
GC content 0.45
exon number 7
gene id XLOC_034586
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 16185376 ~ 16195144 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACACTCCAATCCAGatggtggcggtaatgcaccaaaagctggttgccaaccgccataaaacacacaagaagaagaagaagaagaagtgttCAGGTGGATTTCGTCAGTttcaagtttgtttttgtctcCCTTTCCACTAAGCAAAATCCTTCTCGTTTTCGAATTTCTATGCCTTGTCGGTAGGTTTTTCCacgctcacgagaaaacgcTTGAAGAGATTAAAAAGATGGCAGAATCTTTACCATCATCATCAAAGCTAAAACGGACAAGGAGACAGAGTATTGATCAGATGTGCCAATCTCTGTCATCCTCCCAGGGTCCTCTGTTTGAGGAGCTTCAGTGTTCAGTGTGTCTGGATGTGTTCACTGATCCAGTCAGCACTCCATGTGGACACAACTTCTGTAAAAGCTGCCTAAACGAGTGCTGGGACAAGAGTCAGAATTGCAACTGTCCAATCTGTAGTGAAACATTCAGTAAAAGACCCAAACTCAAAATCAACACAACACTTAGACAAGTAGTGCAGCTCTTTAAGGAAAGGTTGAGTAAATCGGAAGTGCAGCAGATGATCCAGGACCGAATCAAGAAGATTCAAGACATCAAACACTCAGCAGAACTCAGAAAAAAAAGCACAGAGCGAGAGAAAGCATCCACTGTTGGGCTCTTCAGTGATCTGCTGCGCTCCATTGAGATATGTCAGGCCGAGCTGCTGGAGATGATAAAGGAGAAGCAGAAAGCAGCAGAGAAACAGGATGAAGAGCTGATTCAAGAGCTGCAGCAGGAAATCAATGAGCTGAAGATGAGTAATTCTGAGCTGGATCATCTCTCAAGCACTGAGGATAACCTTCAGCACCTAGAGATTAACCCATCCATAGGCAGCCCTCCACACAGCAGGAACGGGCCTGAGATCAGTGTGGAGACTCTGAGGAGAGCTCTGACTCAACTGCAGGAAACTCTGGACCAGAAACTCAGTCAAACTGTGTTAAAGAGGATGCAGCGGTATGCAGTGGAATTGACTATGGATCCCgatacagctcatccagaactcCTCCTGTCTGATGACAGGAAACAAGTGAGAGTTCAAGACGTTGAACATGAGCTCCCAGATATCCCAGAGAGGTTTGATTATTGTCCTGATGTCCTGGCAAAGGAGGGATTCTCTGCGGGGAGATTTTACTTCGAGGTTCAGGTGAAGGGAAAGACTGACTGGGTTGTTGGAGTGGCCAGAGAATCGATTAACAGGAAGGGAGAAATCACAGTAAATCCTCAAAATGGATTCTGGGCTGTGGGTCTGAGGAATGAGAGTGAATATAAAGCCTGTACTGGTCCAGCTGTCTCCCTCTCTCTGAGAGTGAAACCGCAGAAGGTTGGTGTGTTTGTGGATTATGAGGAGGGTTTGGTCTCCTTCTATGATGTGGAGTCAAGATCTCACATCTACTCTTTCATTGGACAATCTTTCACTGAGAAAGTCTATCCTTTCTTCAGCCCTGAGGTTATTGAGGGAGGTCAAAATCCCCCGCTGATCATCTCACCAGTTATTTACAATGATTGAATGAATCCCAAAAGTAAAAAGCAACTCCAAAAA

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-109 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm. Orthologous to several human genes including TRIM11 (tripartite motif containing 11); TRIM17 (tripartite motif containing 17); and TRIM21 (tripartite motif containing 21).

Ensembl:

ensembl_id ENSDART00000173492

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068671 lncRNA downstream 11047 16172570 ~ 16174329 (-) True XLOC_034584
TCONS_00067336 lncRNA downstream 36109 16075216 ~ 16149267 (-) False XLOC_034582
TCONS_00067337 lncRNA downstream 36109 16085852 ~ 16149267 (-) True XLOC_034582
TCONS_00068670 lncRNA downstream 38641 16085852 ~ 16146735 (-) False XLOC_034582
TCONS_00069166 lncRNA downstream 284923 15896968 ~ 15900453 (-) True XLOC_034580
TCONS_00068672 lncRNA upstream 26901 16222045 ~ 16223104 (-) True XLOC_034589
TCONS_00069167 lncRNA upstream 152356 16347500 ~ 16349089 (-) False XLOC_034591
TCONS_00069168 lncRNA upstream 1027393 17222537 ~ 17255612 (-) False XLOC_034596
TCONS_00069169 lncRNA upstream 1056058 17251202 ~ 17255611 (-) False XLOC_034596
TCONS_00067366 lncRNA upstream 1162940 17358084 ~ 17380310 (-) True XLOC_034601
TCONS_00067334 mRNA downstream 151052 15905691 ~ 16034324 (-) False XLOC_034581
TCONS_00067335 mRNA downstream 151052 15912255 ~ 16034324 (-) True XLOC_034581
TCONS_00067332 mRNA downstream 355125 15818778 ~ 15830251 (-) False XLOC_034579
TCONS_00067331 mRNA downstream 772188 15378254 ~ 15413188 (-) True XLOC_034577
TCONS_00067330 mRNA downstream 772357 15373412 ~ 15413019 (-) False XLOC_034577
TCONS_00067342 mRNA upstream 1759 16196903 ~ 16204885 (-) False XLOC_034587
TCONS_00067343 mRNA upstream 3253 16198397 ~ 16205471 (-) True XLOC_034587
TCONS_00067344 mRNA upstream 10465 16205609 ~ 16214891 (-) False XLOC_034588
TCONS_00067345 mRNA upstream 10469 16205613 ~ 16214889 (-) True XLOC_034588
TCONS_00067346 mRNA upstream 36219 16231363 ~ 16237861 (-) True XLOC_034590
TCONS_00067339 other downstream 3784 16176847 ~ 16181592 (-) True XLOC_034585
TCONS_00067338 other downstream 70948 16114300 ~ 16114428 (-) True XLOC_034583
TCONS_00067317 other downstream 1734756 14450524 ~ 14450620 (-) True XLOC_034571
TCONS_00067316 other downstream 1790019 14394515 ~ 14395357 (-) True XLOC_034570
TCONS_00067314 other downstream 1805745 14379544 ~ 14379631 (-) True XLOC_034569
TCONS_00067347 other upstream 153595 16348739 ~ 16349432 (-) True XLOC_034591
TCONS_00067355 other upstream 646855 16841999 ~ 16842116 (-) True XLOC_034594
TCONS_00067360 other upstream 1066472 17261616 ~ 17264309 (-) True XLOC_034597
TCONS_00067372 other upstream 1220244 17415388 ~ 17416092 (-) False XLOC_034602
TCONS_00067385 other upstream 1446044 17641188 ~ 17645750 (-) True XLOC_034610

Expression Profile

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