RNA id: TU185478


Basic Information

Item Value
RNA id TU185478
length 1098
lncRNA type inter_gene
GC content 0.55
exon number 3
gene id G137743
representative False

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 30745785 ~ 30747008 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acTAGACAGCTTCCAGAAAGAGTTGGGAACCtgagaacaaaaacacaatgagCATAACACAATGATCATAATCTAAAAGATTTTAATCCGTTACAACATCAAGTTAAACCAATTTACAGTTAGGATACCAAAGGGTAAGGATATCTGCAGTGCACAGGCACCGGGATTCGGGGCTGCTTCCACCTAGGATGGTACGGGGATGCCATTGGAATTAAACTTCTTGGACCAAGATTCATTTTTGGGTTCGACTCAGTGGGCTTGGATGGGTAGTCTGGGTAGGCGCCTTGCTGGGGCCTAGACGGGTCAGCGGGTTGCTGGGGCCTTGATGGGTAGTCTGGGTAGGCACGTTGCTGGGGCCTAGACGGGTCAGCGGGTTGCTGGGGCCTTGATGGGTAGTCTGGGTAGGCGCCTTGCTGGGGCCTAAACGTGTCAACGGGTAGCTGGGGCCTTGATGGGTAGTCTGGGTAGGCACGTTGCTGGGGCCTAGACGGGTCAGCGGGTTGCTGGGGCCTTGATGGGTAGTCTGGGTAGGCACGTTGCTGGGGCCTAGACGGGTCAGCGGGTTGCTGGGGCCTTGATGGGTAGTCACGTTGCTGGGGCCTAACCGGGTAGGCGGGTTGCTGGGGCTTGGATGGGTAGGCTGGGTAGGGGGGCTGCTGGGACTTGGCTGGGTAGTCTGGGTAGGCGGGTTGCTGGGGCTTGGATGGGTAGGCTGGGTAGGGGGGCTGCTGGGACTTGGCTGGGTAGGAGCGCTGCTCGGGCTTGGCCTGCCAAGTGGACTCTGGTCGGGAAAATACAGCGTAATGCCATAACTTGACGAGATACCCGACTTGCGGTATTCAGTCTGTGGAATTTCAGCTTCCGTCTGAAGGACTCCTGCATTAGGGTCATTTTGAAGTGGCTGCTGGAGTTTTTGTCTGGATTTCGGAATCAACAGTGGGCCGGGCCTGTAACTAGAAACACTTCCCTCTGGACTGTATCCATCTACTTGCCTACCAGAAGAACCACGAGGACCTCCTGCACTCGCTGCAGCAACTGGCTCCAGGTTCTCAGATGAAGCAGGTTCAAGGCTTCTTTGAAAATCAAAGTAGCTGAgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185410 lncRNA upstream 87346 30586858 ~ 30658439 (+) False rnf139
TU185404 lncRNA upstream 155875 30587242 ~ 30589910 (+) False rnf139
TU185405 lncRNA upstream 155875 30587242 ~ 30589910 (+) False rnf139
XR_005641309.1 lncRNA upstream 192082 30550906 ~ 30553703 (+) True LOC120571837
XR_005641308.1 lncRNA upstream 192082 30550907 ~ 30553703 (+) False LOC120571837
TU185511 lncRNA downstream 117716 30864724 ~ 30864997 (+) True G137765
TU185512 lncRNA downstream 118101 30865109 ~ 30866120 (+) True G137766
TU185520 lncRNA downstream 169059 30916067 ~ 30919751 (+) True G137774
TU185522 lncRNA downstream 190017 30937025 ~ 30939985 (+) True G137775
TU185525 lncRNA downstream 194353 30941361 ~ 30941841 (+) True G137777
XM_039820007.1 mRNA upstream 109812 30591473 ~ 30635973 (+) True tmem65
XM_039820702.1 mRNA upstream 157849 30571463 ~ 30587936 (+) True rnf139
XM_039820929.1 mRNA upstream 176260 30555292 ~ 30569525 (+) True tatdn1
XM_039819221.1 mRNA upstream 196958 30536352 ~ 30548827 (+) False LOC120570731
XM_039820533.1 mRNA downstream 356808 31103816 ~ 31110425 (+) True LOC120571534
XM_039820534.1 mRNA downstream 372781 31119789 ~ 31166090 (+) True si:ch211-264f5.6
XM_039820749.1 mRNA downstream 721117 31468125 ~ 31471167 (+) True LOC120571681
XM_039819350.1 mRNA downstream 1052100 31799108 ~ 31801682 (+) True LOC120570797
XM_039820763.1 mRNA downstream 1113937 31860945 ~ 31870388 (+) True LOC120571697
unassigned_transcript_626 other upstream 227895 30516558 ~ 30517890 (+) True LOC120570927
TU185363 other upstream 227969 30516583 ~ 30517816 (+) False LOC120570927
TU185192 other upstream 590670 30151619 ~ 30155115 (+) True G137551
TU185133 other upstream 890319 29849867 ~ 29855466 (+) False LOC120571185
TU185114 other upstream 897575 29839624 ~ 29848210 (+) False LOC120571184
TU185519 other downstream 174158 30921166 ~ 30936857 (+) True G137773
TU185622 other downstream 870587 31617595 ~ 31683452 (+) False LOC120570800
TU185625 other downstream 870587 31617595 ~ 31683452 (+) False LOC120570800
TU185629 other downstream 870587 31617595 ~ 31683452 (+) False LOC120570800
TU185635 other downstream 870587 31617595 ~ 31642463 (+) False LOC120570800