RNA id: TU200788


Basic Information

Item Value
RNA id TU200788
length 1104
lncRNA type inter_gene
GC content 0.49
exon number 5
gene id G148509
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 32831676 ~ 32962233 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacacacaagcacgtacacacaaacacgcaagcactgcgcacacacacacacacacacacacgtacacagacacactcacacacacgcatgcacacagacacacacgtatgCACGCACAgaaacatgcacgcacacagacacacacgcacacagaaacacgcacgcacacacacacacacacacaaacagaaacacacgcacacacacacacacacacagaaacacacgcacacacacacacacacacacacacagaaacacacacacacacacacacacacacacacacaaacagacacacacacacacacacacacacacacacacacagttgcgtGAGGGCGAAGAAGAAGCTCCCTTTAGCAGCGTCCAAAAGAACCCGATATTAACGACACTTTATAcgttatatttatattaataagaGTGATGTCATCACGCCGATGACATCACAAAGCGAACACACGCGGTCGGTCGGCGAGGGTTAAAATACGCTCAAAAAATTAATAcgcagagaaaagaaagaaaaacagccaatcagaacccaaactggaaataaaaaaaaaaaaagaaaagaaatctgaaaaaaacaacaaaaagggaAACTTCATTTCCCATAAAGCCCGGCGGCGGCAGTGGCAGCAGTTTATCAGGATTGTCCCGTGATTGGTCGGTTCCAGAGACAGCAGAGCAGCACACGATGTCATGCTTCTCTGGCCAATCACATTCACCTGTAGTGTttctgtcatcatcatcatcatcatctcccaTTGGGCGGCGCACCTCCAGAAGGGAGCGCTCTCATTGGGCGGCTCCCTCCGGAGGGGAGCGCTCCCATTGGTTGGTTTCTGACCTTTACTGTGAAAAAAGGTCTTAAAGTCACGGagctaataaaataaagagGCTCCACTCGTCATCTCCCACAATGCCTCGCTCTGCGTGGGCGGGGCTTAGGCAGGGTCAGTAAACGCGTCATCGTTCAGGGCGGATAAAACCCGCCGAGGATGCGTTCAGGCTCACGTGGGGGGAGTGGGAAATGTGgcagttttctgtttttgtgtgtgtctctgtgtgtgtgtgtctgtgtgtgggtctgtctgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200743 lncRNA downstream 32423 32725833 ~ 32833283 (-) False G148471
TU200741 lncRNA downstream 32423 32831895 ~ 32833283 (-) False G148471
TU200742 lncRNA downstream 32423 32831895 ~ 32833283 (-) True G148471
TU200813 lncRNA downstream 34635 32827724 ~ 32831071 (-) True G148520
TU200814 lncRNA downstream 34635 32827724 ~ 32831071 (-) False G148520
TU200842 lncRNA upstream 16285 32973356 ~ 32976183 (-) True G148543
TU200853 lncRNA upstream 160896 33117967 ~ 33118250 (-) False LOC120572612
TU200533 lncRNA upstream 175201 33132272 ~ 33132502 (-) False LOC120572612
XR_005641607.1 lncRNA upstream 202222 33159293 ~ 33175504 (-) True LOC120573033
TU200875 lncRNA upstream 218559 33175630 ~ 33261679 (-) True G148558
XM_039822269.1 mRNA downstream 54102 32603498 ~ 32811604 (-) False LOC120572814
XM_039822265.1 mRNA downstream 202896 32652305 ~ 32662810 (-) True LOC120572810
XM_039822272.1 mRNA downstream 253511 32603498 ~ 32612195 (-) False LOC120572814
XM_039822270.1 mRNA downstream 253511 32603498 ~ 32612195 (-) True LOC120572814
XM_039822248.1 mRNA downstream 379353 32476726 ~ 32486353 (-) True LOC120572800
XM_039822227.1 mRNA upstream 28451 32985522 ~ 32995763 (-) True LOC120572789
XM_039822193.1 mRNA upstream 49509 33006580 ~ 33034300 (-) True LOC120572766
XM_039822448.1 mRNA upstream 92288 33049359 ~ 33055500 (-) True LOC120572924
XM_039822223.1 mRNA upstream 106125 33063196 ~ 33073135 (-) True LOC120572785
XM_039822201.1 mRNA upstream 127267 33084338 ~ 33090657 (-) True LOC120572772
TU200744 other downstream 110345 32731080 ~ 32755361 (-) True G148472
TU200707 other downstream 165301 32698321 ~ 32700405 (-) True G148453
TU200650 other downstream 490157 32373078 ~ 32375549 (-) False LOC120572607
TU200566 other downstream 698331 32163056 ~ 32167375 (-) False LOC120572607
TU200397 other downstream 1128024 31717372 ~ 31737682 (-) False G148246
unassigned_transcript_715 other upstream 245030 33202101 ~ 33202172 (-) True trnag-ucc_11
TU200865 other upstream 280699 33237770 ~ 33312272 (-) False corin
TU200861 other upstream 316060 33273131 ~ 33283874 (-) False corin
TU200862 other upstream 316060 33273131 ~ 33283874 (-) False corin
TU200864 other upstream 316060 33273131 ~ 33283874 (-) False corin

Expression Profile