RNA id: XR_005641606.1



Basic Information


Item Value
RNA id XR_005641606.1
length 999
lncRNA type intronic
GC content 0.45
exon number 5
gene id LOC120573032
representative True

Chromosome Information


Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 31632948 ~ 31634645 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AGGGAGATTACTACATGTGCCGAACAGCACTGCGCATTTCCAAGACTTTACAAGAATAACACAGTCATTGAAGTTGTGTGCAACGACTTTGCTGGATTGCAGGAAAGCCTGGATGATTGGTTTCATCCTCCACCAAGGAACTGCAAACTGATAAACAACAAAGGATTACTATGCCAAGGACAGAGAAACATAGTTCGGCAGGATTTCGCAATTGGTAGACCTACACTGCTAGTGCTGAGGTTTCTGTGTGTACAAACTACCAGAAGGAACAAGCAAATCTGGCCTAATCAATTGCCAGAAGAAGTCAATATCCTACGCGAAGGGTGGTTTTTTGTTTCCCCTGTAGATAGTTTATTTGAAATAACATGTAATACAATACGACTCATGATACATGTCCCCTCCCCAGGTACATACCTATTGGTATGACTTACCACCAAAACAGGTCAGCCCATTTTGTGAGCTTCCACCGTGTTGGCAATCAGGGATGGCATTACTATGACGGAATGAAAGAGACATCCAAAGCAGGTGGTGGAGTTGTTAAAGTCAATGATGCGGAAGTGAGGAGACTCATGTTACAAAGCTGGATTGCAGGACACTTGGTCCTTGTAACAaaaaataaataaaattggtgGTGCGATCGTCACATGGAAGTCTGAAGATAAGTGTACAGCGACTCCAAGAGGAGTGTGACGTTGTTCCTGTTTGTTGGGTTAAAAAATTATCTGGGATGATGTTGAGGAGGCGTGCAGGAAAATGTGGGGAAATCAGCATCCTGAACCAGGAGGACAAGACAGCCTTTACTGCAGAGACAGAAGCTGTAAGGGGCATGGCTGGCAATACCCACCTGGATTGGCCTGAGGAGGAATGACTTCACTCACCCGTGGGCAAGGTCCAGTGTGTACCTACCTCCCCATGAGCACAGCAGGAAATTCAGCATAGAAATGCTCTGTGCTTCAGAATCCAGGGAACTGGAGACCTGAGACATGCACATAGCCTACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU200430 lncRNA downstream 52546 31428928 ~ 31580402 (-) True G148246
TU200385 lncRNA downstream 183496 31446830 ~ 31449452 (-) False G148246
TU200502 lncRNA downstream 216121 31414749 ~ 31416827 (-) True G148299
TU200496 lncRNA downstream 229434 31402663 ~ 31403514 (-) True G148295
TU200481 lncRNA downstream 254384 31370488 ~ 31378564 (-) False G148286
TU200553 lncRNA upstream 21150 31655795 ~ 31879818 (-) True LOC120573013
TU200558 lncRNA upstream 21150 31655795 ~ 31794099 (-) False LOC120573013
XR_005641568.1 lncRNA upstream 27713 31662358 ~ 31664297 (-) False LOC120572994
XR_005641569.1 lncRNA upstream 27713 31662358 ~ 31664297 (-) True LOC120572994
TU200493 lncRNA upstream 93257 31727902 ~ 31873615 (-) True G148293
XM_039822162.1 mRNA downstream 9135 31435815 ~ 31623813 (-) False LOC120572747
XM_039822159.1 mRNA downstream 9135 31435815 ~ 31623813 (-) True LOC120572747
XM_039822160.1 mRNA downstream 9135 31435815 ~ 31623813 (-) False LOC120572747
XM_039822161.1 mRNA downstream 9136 31435815 ~ 31623812 (-) False LOC120572747
XM_039822163.1 mRNA downstream 21915 31435815 ~ 31611033 (-) False LOC120572747
XM_039821928.1 mRNA upstream 497691 32132336 ~ 32375524 (-) True LOC120572607
XM_039822253.1 mRNA upstream 747108 32381753 ~ 32419579 (-) True LOC120572803
XM_039822254.1 mRNA upstream 774698 32409343 ~ 32419579 (-) False LOC120572803
XM_039822256.1 mRNA upstream 806003 32440648 ~ 32448330 (-) True LOC120572804
XM_039822255.1 mRNA upstream 806510 32441155 ~ 32448330 (-) False LOC120572804
TU200398 other downstream 24462 31607051 ~ 31608486 (-) False G148246
TU199667 other downstream 801628 30829970 ~ 30831320 (-) False LOC120572603
TU199644 other downstream 955951 30675187 ~ 30676997 (-) False G147699
XR_005641506.1 other downstream 1122922 30503116 ~ 30510026 (-) False LOC120572891
XR_005641505.1 other downstream 1122922 30503116 ~ 30510026 (-) True LOC120572891
TU200397 other upstream 82727 31717372 ~ 31737682 (-) False G148246
TU200566 other upstream 528411 32163056 ~ 32167375 (-) False LOC120572607
TU200650 other upstream 738433 32373078 ~ 32375549 (-) False LOC120572607
TU200707 other upstream 1063676 32698321 ~ 32700405 (-) True G148453
TU200744 other upstream 1096435 32731080 ~ 32755361 (-) True G148472

Expression Profile