RNA id: TU205232


Basic Information

Item Value
RNA id TU205232
length 1469
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G151465
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 3625664 ~ 3627549 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAGTCCGAGGTACTCACTAAGTCTCGCCATCTGACTGGACAAACTGTCAGCTTTTGAGAGGCTGTACGCGCTGTCGTTGGTAACTGACGCAATCCCTGATTGGCTGACGGACTCTGGTGTCAAGTCCAGGTCTGCTAGGTTGACGTATGTGTGATTCTTCTCTGCGGAGTTTTGACCATTTGGTATTCGTCTTTCAAACCTGTGGTAGCGCGTGAAGGCGGTGTTCATCTCATCGTTCGCTGCCAGCAACTCTTCGATCAGCCTCTCCTCACTGAGTCTGGGGACGATCTTCACTATCCTGTCTTGCATTTCCTTACACACTGTGTATAACTGCTAATGACACAATCAGACAAAGAATGCGTGGGCGGGGGGGGATTGAGGGGGCGGatgcaacacaaaataaataaagtactaGATCAGGTAAAGGCAACGCACCGTTACTCAACATGACTGGAAGGGAATGAGATACTTCACATTAATAAAGCTCAACAGTGGGGTTCCAGAAGTGAAGAATCACATTCAATTTCTCAGTAAGGATGTTGATTATTaaccataatgtctaaaccatccgaggtaAACTGACCATGACCTGTTTTAAAAatgcccatattatgctttttgtcttttcccctttcctttattgagttatatatcttttttgtgcatgttataggtttaagtttaagtgaaaaagcccaaagtccccccccaaagggacttaccatctccaacataaaacactgttcaccaactgctccaaacagctctattgtagtccagcctttacttcagagacagacgtggtcactttgtaacacatgttataatgctcgcctagctgctagcatagcacgccctcatactctgcttctgactggctagtagtccttacctaggtactgtcaggacacgccctcatgctctgcttctgactggctagtagtccttacctaggtactgtcaggacacgccctcatactctgcttctgactggctagtagtccttacctagctactgcacatgtgcgactcccaacaaagatggaacagaagtgagatgcctcactctgtagctaaaacagagagctcaacacacagggtgaaaagaggagctgcagcaatgtgcagtacaacaaaaatatggtgtctttttgaaaattaaaccatgtaagcctattctgatataacctctaaatacaattatgaacctgaaaatgagcataatatgagcactttaacaaaaacatgttttactacccacaatcctaagcgtaacaaGTGGAGCTCGCTGTTACCATGGACCATGTACCTCACCCATGAACAGCTGGTGAgccgaatcaaatgttttatggttgCGATTCATCTCatagctggttggcttggttccaggctCAAAACTCTTCATAGAAGCATTTTCTAAAACGTCAATAGAGATATTTGGGTCCTATTTTAAAGATCTAAAGCGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205186 lncRNA upstream 87749 3534920 ~ 3537915 (+) True G151430
TU205165 lncRNA upstream 191284 3434095 ~ 3434380 (+) True G151414
TU205162 lncRNA upstream 195016 3430358 ~ 3430648 (+) True G151411
TU205076 lncRNA upstream 211127 3414201 ~ 3414537 (+) True G151336
TU205064 lncRNA upstream 268489 3351182 ~ 3357175 (+) False ldlra
XR_005641784.1 lncRNA downstream 40343 3667892 ~ 3670254 (+) True LOC120573845
TU205273 lncRNA downstream 321313 3948862 ~ 3949675 (+) True G151498
TU205252 lncRNA downstream 325341 3952890 ~ 3953432 (+) True G151480
TU205253 lncRNA downstream 325341 3952890 ~ 3953402 (+) False G151480
TU205254 lncRNA downstream 325386 3952935 ~ 3953432 (+) False G151480
XM_039824415.1 mRNA upstream 50941 3566313 ~ 3574723 (+) True hmox1a
XM_039823870.1 mRNA upstream 154649 3469465 ~ 3471015 (+) True foxd7
XM_039826332.1 mRNA upstream 229971 3385439 ~ 3395693 (+) True spc24
XM_039826330.1 mRNA upstream 241095 3368814 ~ 3384569 (+) True kri1
XM_039826329.1 mRNA upstream 268469 3331004 ~ 3357195 (+) True ldlra
XM_039826094.1 mRNA downstream 89015 3716564 ~ 3767061 (+) True ntn1b
XM_039824519.1 mRNA downstream 187572 3815121 ~ 3952539 (+) False usp43b
XM_039824518.1 mRNA downstream 198634 3826183 ~ 3952540 (+) True usp43b
XM_039824446.1 mRNA downstream 347010 3974559 ~ 4017811 (+) True grb2b
XM_039824449.1 mRNA downstream 409242 4036791 ~ 4074967 (+) True LOC120574218
XR_005642001.1 other upstream 243051 3382514 ~ 3382613 (+) True LOC120575510
XR_005642000.1 other upstream 244278 3381287 ~ 3381386 (+) True LOC120575509
TU205031 other upstream 477687 3146504 ~ 3147977 (+) True G151315
TU204936 other upstream 622300 3001899 ~ 3003364 (+) True G151240
TU204708 other upstream 823443 2799469 ~ 2802221 (+) True G151122
TU205238 other downstream 31448 3658997 ~ 3663282 (+) True G151471
TU205526 other downstream 690624 4318173 ~ 4319498 (+) True G151695
XR_005641832.1 other downstream 710545 4338094 ~ 4346405 (+) False LOC120574173
TU205564 other downstream 772481 4400030 ~ 4403862 (+) True pde6hb
TU205565 other downstream 772481 4400030 ~ 4455745 (+) False pde6hb

Expression Profile