RNA id: TU206606


Basic Information

Item Value
RNA id TU206606
length 4434
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G152497
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 6387165 ~ 6391598 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttttattaacaAATGCCCttttgtttttagaaaaaaaatactcacAATTAAAAGTACACAAATGGCTCAAACTAAAAAAAGTCCAATGACTTTTTTCCTAATGCTTTTACAATCATTTACATGAGGCACCTCAACACTTACAGAAATAACACAATCCTCATATTTTTGACAGAGTTGAAGTGTGTTTGATACGTCGCGCCAGGCACTTAAATTCCTTAAAGTATATCCACAAAACCCACATAAGAGGTGAGTGCATCACGGATGTGATTATAACTATTTAAAATAACAGAGTTTGCAGTATTTAGCCGAGGTCTGGCATACGATACCTTCCTATTTACTGGAGACTACCTTAAAGTCCCTCCGTTCGCTCCTttaaaggataggttcacattttcacaTCACTTCCATTGAAAGTGCATTTGGGAGTGACCTAAAATAGACTTGAAAGTGTGTGTACCTATTCTTTAAGCAGCTAGACTGTAAGAGCAAAAGTTAGAAAATCAAGGAGGGAAACACAATAGAAGCTGAAGTATGGTGTAGTATGTCTGTGGTAACATATTAGattgtatataaagatggacgGCTTGACAGCAAAGATCCTTATACTAAAGATGGTGCATTTCAAGCAGTGCCaacggtacacacttcctgtctcctaaaggggcgtggcctcgaTGGACGTGTAGTGAACGTCGTGTGGATGgctgaaaagttatatttgaatCATAAGTTATTTAGCTAACTTTATATATTTACAGCGCTAAAAGACATTTAGCATCAcggagattagttttgttagggcgTTCACAGACgctagctgacgttagcttctctgtgttgccagatcttgcgagagtttggtcctgagacagaaacaggtctcaaacaaagttaattttctccttatgtgtccgtctgaaaaatgccatttcagtgtcagaatgttctggagattATGTGGCTTGTGAGAAATGGGTCCAATATctactttggtgactatggggttaaagaatcgctcataatctgtgttcacgttcacttttcccattggaatcaatacactcgGACCTGCCGCTGGTCTCCTAAAaaggcgtggccgtggcggagcCTACCTGACACATACAGGAAACTACTCCGGGTCCATCTCTGTTGACGGCTCCCCAAAAGTGACGACAAAACATCTTGATTGCCCCTCTGGTGCCTGGCGCCAGTATAGATCATAAACCCCGCCCCCTCCATGTTCGCAGAtgggacataaaaaaaattaaactacaCGTCAAAGACTGTTTGATATAAGGTAGTTGTGATTGCGCTGTTTATTCAAGTCATCCGTCTTCTGATAAAGTTGATTTTAAtaagttatttgatgctattaAAACGGGGTAtaacgtcatgattgacagctgtgaatTACTCACGATTGGTTGAGCTGGAGTATGGGCGGGACTTTGATACCGCGGCTCTGTTCAATCACTACTGTGCCGACTCAGGCTCCAAAATTGCAAGATGGCAGCGCCTGTAtccgggatattttggcttcataTCAATGGAAGGAGGTGGAGACACGCCGTCCATCTTTATCTGTAGTCTATGTGAAAAATGCATGAAAGTGTAAAATGATAAATTCAAaagattttgtgaaataaacttgtgtttgtttgtagtaAGTCTTCGAGTTTTTCTCAAGAGAGGTTTTGGATTCACAATACAGACATTGTGTCAGAAATAGTCAgagtacacacaaacatgtgtTCCACAgataaaaactacaaaaaaatggATCGTATAATACATTTTCAGTGTAAACTGGTAATTACAGCACAGTAACAATCTCAAAGAGGAAAAGGACATAAGTAAATCCACATTGGCAAAAAGTACTGATACAGTACAGGACCACCAAAAATCACCATTAAGAGCAACAATATCCTTATGAAGAAGGCATTTGTGCAGGAGTTTCATTTTCCCTTCATGTTATGTTTGTACGTGCATTTACAAGTTCAAAAGTAAAGGGAGTGAAACTACAGTATGGCAGTTTTCAAGACTAAAGAGTCTAAAGTTACCACAAACCCATGTTGGTACCATACTGTATGTAGACATGACGCATTGTGAGCCTAGATGTAGCGCTTACATCAATCATGCACAAACATTACTCCCATGTttacattcagaaaatgtccAACCCAAGACATTTAAGTCccattatgtaaaataaaacattaagacACTCGGCTTCACATCTGACGTAGTCAAAGTGCAATGCTATCAACAAACACGCAATATTCTGAATATGCATAAATATTAAATAGCAATTTTATGTCAACTCTTAGTCCCAAATAAATTGGACCATTATTTCATTATCATTATCTGcaggaatctaaaataaaatgacaatttatttcataatgtcactcTAATGTAACTCATGCAGCTGTGTGAAACCTTTTAACTCTCATTATTTGAACATTGTACGTCAAGATTTTGAGAATTGAAAATCTCTTCATTTTCAATTAGTGGGTAAAAACCTTGGCAGTACAAACAGATACCGGATTCAGAGACATGGCACATTGAAACCAtcaagacattttaaaaacaagctgtatttctctaccaattaactatcactggagaaaatataaatgaatggaaagaagTAGTTGGGGCCtgctgtatgtacagtatgtatgtatctaaTGTAATGCCAGTTTTCTTAATACTAAATAGAATACAAACTGTAGTAATACTTCCAGTGCTGTAACCTACACAAGAACCAACATGATGTCTAAAGCGAGGATACTGTAACTGCCACAACGTTTCAAGAATTGATATAAAAACACACGAGATTCTGAGTGTCACCTCGAATTACATCTTTCAAAATAATGGCCATGAATTGGAGAGATGTATCTCTACTCCATCCAATAAACCAttatgttaaaggtccaatgaaatggtgctctttggatgcttttatatagaccttagtggtcccctaatactgtatctgaagagagaggaggggggcaaggtggagggtgggggtgtggccttgaccaactgccactttgctcgtttgaaagccatgatgtctctctctcatgggtgggccaaattctctgggcgggcaaagcagagaaaggggaggtaaccttgctccttatgacctcataaggagaagattccagatcggcccatctgagctttcattttctcaaaggcagagcaggatacccagggctcggtttacacctatcaccatttctagccactgggggaccataggcaggctgggggaactcataaaaaacctcataaagtgaagttttcatgccatgggacctttaaccaaaCTTATTTATCTTTCACCTAAACTTTGGTTATTGATTAGCTGAAGTGGTGGTAAACTATTGATTATCTTTACTACAAAAGGCAACTAAGGCACTTTGCACTCCTAATTAGAAAAAAGGTCAAATAAACAGATCTAATCTTTCACTGCAACACGGTGTCAAGAAAAGATGAGATTCATTTATTTGTGGGTTTATGGCTTAGTTAAAAATGTCTCATCAATTATCGGGTCCAAATCCACAGCAGTGCCTTTCATGTGTTAGCAAAACTGCTTCTAAAGCAGCACAAACAGATGTAGGACCTGCCTAATACGTGTATGTACAAAAATCAATACACCAGCgcgtaaataaaataaatgaaggtCAAAGTGCTTCAAGATTCAATACACCAGTGTGTGAGAAGATACAGAAGGAGTGCTCTAATCGGATACTGAAGCCTCAGCAATCAATTACATGTAACATTAGACGCATGTTCCCGTCCGCAAAACATCGTTTTTGTGCATGCGTGTGCCGAGCCCCCATGTTTGTTTTCCTGACTGTTATAGACTATAGGCAGGAGTCCAGGTGTATCTGCAGGTCAACACTGTCCAGGAAGTCCATGGAAAAGACACTATGGGGTGTTTGAGGGCACAGCGGGGCCAGTGTAGAGgtttcctctcccctctctcctcccatggtGAGGTCCAACCAATCCATACCGTCTAGCCCTTGCTCCCCGTCCCCTGCCATGCCGAAGGTATCCATGGGAGACGAGGGATGGTCCAGGATGCTGGGGGTGCACAGCATTTGACTGTGCAGGTCATCGATCAACGTCAACAGGCCTCCAGGCTCCACCCCCAGGAGAGGCTTACCGGTGGTGCTTTCCAGAAAGTCTTCCAGGCGTCCGCTCCCAGCGCTACCGAGGTGTTGTTTCTCTTCTATGGTGTCTGCCAGAGCCTGAAGCTCAGACTGCATCGAGGAGGCCGACTGTGGGCTGTCACAGCTGGGTGGGACCGGGGGTGATAGCAACAGCTGAAGCGGCGAGGGAAGGGGAGAAGATTGTGGATCTAGACGATCCAGAGAAGGGTCCGGTACTGGTTTAAAGGAGGTCGACGTa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206604 lncRNA downstream 5974 6380875 ~ 6381191 (-) True G152495
TU206603 lncRNA downstream 8912 6377959 ~ 6378253 (-) True G152494
TU206601 lncRNA downstream 27877 6359069 ~ 6359288 (-) True G152492
TU206578 lncRNA downstream 48058 6338673 ~ 6339107 (-) True G152473
TU206554 lncRNA downstream 73766 6312812 ~ 6313399 (-) True G152462
TU206660 lncRNA upstream 35730 6427328 ~ 6428236 (-) True G152548
TU206672 lncRNA upstream 205756 6597354 ~ 6597843 (-) True G152559
TU206674 lncRNA upstream 206401 6597999 ~ 6598876 (-) True G152560
XR_005641813.1 lncRNA upstream 317804 6709402 ~ 6711199 (-) True LOC120574035
TU206694 lncRNA upstream 365193 6756791 ~ 6757085 (-) True G152577
XM_039824585.1 mRNA downstream 36901 6345320 ~ 6350264 (-) True ccdc97
XM_039823846.1 mRNA downstream 142746 6229363 ~ 6244419 (-) True baiap2l2a
XM_039823670.1 mRNA downstream 218147 6155299 ~ 6169018 (-) False csf2rb
XM_039825759.1 mRNA upstream 184546 6576144 ~ 6585025 (-) True desi1a
XM_039824026.1 mRNA upstream 215686 6607284 ~ 6649259 (-) True llgl1
XM_039824028.1 mRNA upstream 259231 6650829 ~ 6698387 (-) True myo15aa
XM_039825833.1 mRNA upstream 320026 6711624 ~ 6718897 (-) True drg2
XM_039825832.1 mRNA upstream 320026 6711624 ~ 6718893 (-) False drg2
TU206522 other downstream 159051 6182408 ~ 6228114 (-) True G152441
TU206279 other downstream 773497 5574680 ~ 5613668 (-) False atp5mf
TU206278 other downstream 773497 5610556 ~ 5613668 (-) False atp5mf
TU206260 other downstream 804304 5580368 ~ 5582861 (-) False bud31
TU206270 other downstream 832915 5549318 ~ 5554250 (-) False top3a
TU206683 other upstream 328186 6719784 ~ 6720643 (-) True G152567
XR_005641918.1 other upstream 1690540 8082138 ~ 8100398 (-) False LOC120574885
TU207167 other upstream 2049581 8441179 ~ 8444381 (-) True G152952
TU207482 other upstream 2339799 8731397 ~ 8733019 (-) True G153172
TU207525 other upstream 2420744 8812342 ~ 8816276 (-) False natd1

Expression Profile