RNA id: TU227254


Basic Information

Item Value
RNA id TU227254
length 932
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G167649
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 22215533 ~ 22216464 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGCAGTGATAAAAGTTACTGACCTATTGAGAATTTGGGTGTTTCTACAATACCTTTTCACATCTACATTTAAATGAGTGCATTGTTAGTTACTAATCACAAACAGCAGGGAAATATAGACGAGCTCTTGGGAGAGAAtcattaaattattttaatgaaatgtaggAATATTATAAAAATGCGACATGTTGCATTCACACGTCAGAACGTGAATATTTTCAAAATTATCTTGTTTTAATGGAAGAAGTGGGCTTGAAAGATTGAAATGTACCAGGCAGTGCAGAATGACTACAATGCGTCTATGTGCTGtgccctcctttttttttactagtcGTATCTGCAGCCAGTGATTGTACGATCCTAACAAAATGAAAGACTTGTACCTAgtactttatttttaaaatgggAACACCGCAGGTGCATATCTGTCTACAGGCCTTGTACACAAATTTGTAGTGCAGAGAAGGAAAATGACATTTATTTCTTACAATGTCAAATGAAGGAGAAGACTGTCAGCAAAACAATTTAGATGTGATACCACACATGCGGAAGTTGCAAGGTATGCGCCATGGTTTCAATCTTCTACTTGGCCTGAGAAATTAAAGACTGACAGCAGGGGGCGCCTGTGGCAAACTAGTGTGACCCTTCCGCCTTCCCGTATCCTCTGCGCATGCTCGTGTTGCCCAAGAAGGAGTGTCCTATGGGAGTGTCTACAGCTGATGCATGTCATCAGGATAGTGTGACGGAAATATTTAATACGGCGAGAGCGCGTGCCAAGTTTATGAAGGTAAACTCAGTACCATCACCTGTGCAGTATAATGCTATACTGTATACTGCTGTCTTTAAGAATGATAGTTTAGAGATGTTGATACATTATAGGGTGTTGGTGTATTGCATTAGTCTGTATTTTTAGTTATGTGCTGTTTGTCCCC

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0006508 proteolysis biological_process

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko05164 Influenza A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227133 lncRNA upstream 183893 22030297 ~ 22031640 (+) True G167569
TU227132 lncRNA upstream 184168 22030297 ~ 22031365 (+) False G167569
TU227126 lncRNA upstream 197628 22016075 ~ 22017905 (+) True G167564
TU227127 lncRNA upstream 197628 22016075 ~ 22017905 (+) False G167564
TU227116 lncRNA upstream 233281 21981342 ~ 21982252 (+) True G167559
TU227256 lncRNA downstream 1617 22218081 ~ 22227298 (+) True G167651
TU227283 lncRNA downstream 233406 22449870 ~ 22452122 (+) True G167670
TU227338 lncRNA downstream 237755 22454219 ~ 22455752 (+) True G167711
TU227344 lncRNA downstream 244083 22460547 ~ 22463330 (+) True G167717
TU227401 lncRNA downstream 404929 22621393 ~ 22645826 (+) False zgc:163098
XM_039777822.1 mRNA upstream 245 22212857 ~ 22215288 (+) True si:dkey-251i10.1
XM_039778259.1 mRNA upstream 71892 22134507 ~ 22143641 (+) True kif20a
XM_039776641.1 mRNA upstream 81714 22128250 ~ 22133819 (+) True zgc:175280
XM_039777949.1 mRNA upstream 130076 22083968 ~ 22085457 (+) True gsx1
XM_039777678.1 mRNA upstream 199855 22002808 ~ 22015678 (+) False LOC120544110
XM_039778042.1 mRNA downstream 48546 22265010 ~ 22333325 (+) False LOC120544364
XM_039778036.1 mRNA downstream 60045 22276509 ~ 22333325 (+) False LOC120544364
XM_039778037.1 mRNA downstream 60046 22276510 ~ 22333325 (+) False LOC120544364
XM_039778038.1 mRNA downstream 60046 22276510 ~ 22333325 (+) False LOC120544364
XM_039778039.1 mRNA downstream 60047 22276511 ~ 22333325 (+) False LOC120544364
TU227214 other upstream 71334 22141545 ~ 22144199 (+) False kif20a
TU226958 other upstream 445335 21765397 ~ 21770198 (+) False LOC120544341
TU226938 other upstream 494668 21715699 ~ 21720865 (+) True dnajc18
TU226936 other upstream 517152 21680193 ~ 21698381 (+) False LOC120544614
TU226872 other upstream 606786 21599083 ~ 21608747 (+) True LOC120544432
XR_005636496.1 other downstream 178052 22394516 ~ 22422054 (+) False LOC120544391
XR_005636392.1 other downstream 1625073 23841537 ~ 23916038 (+) False gria3a
TU228068 other downstream 1710878 23927342 ~ 23928481 (+) True G168226
TU228425 other downstream 2193889 24410353 ~ 24415769 (+) False gab3
TU228996 other downstream 4348225 26564689 ~ 26568495 (+) False LOC120544064

Expression Profile