Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_039777949.1 |
| length | 1386 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 2 |
| gene id | gsx1 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_053127.1 |
| NCBI id | CM020924.1 |
| chromosome length | 37730433 |
| location | 22083968 ~ 22085457 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| species | eurasian perch (Perca fluviatilis) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| id | description |
|---|---|
| K09310 | GSH; homeobox protein GSH |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU227133 | lncRNA | upstream | 52328 | 22030297 ~ 22031640 (+) | True | G167569 |
| TU227132 | lncRNA | upstream | 52603 | 22030297 ~ 22031365 (+) | False | G167569 |
| TU227126 | lncRNA | upstream | 66063 | 22016075 ~ 22017905 (+) | True | G167564 |
| TU227127 | lncRNA | upstream | 66063 | 22016075 ~ 22017905 (+) | False | G167564 |
| TU227116 | lncRNA | upstream | 101716 | 21981342 ~ 21982252 (+) | True | G167559 |
| TU227254 | lncRNA | downstream | 130076 | 22215533 ~ 22216464 (+) | True | G167649 |
| TU227256 | lncRNA | downstream | 132624 | 22218081 ~ 22227298 (+) | True | G167651 |
| TU227283 | lncRNA | downstream | 364413 | 22449870 ~ 22452122 (+) | True | G167670 |
| TU227338 | lncRNA | downstream | 368762 | 22454219 ~ 22455752 (+) | True | G167711 |
| TU227344 | lncRNA | downstream | 375090 | 22460547 ~ 22463330 (+) | True | G167717 |
| XM_039777678.1 | mRNA | upstream | 68290 | 22002808 ~ 22015678 (+) | False | LOC120544110 |
| XM_039777680.1 | mRNA | upstream | 68290 | 22002811 ~ 22015678 (+) | False | LOC120544110 |
| XM_039777679.1 | mRNA | upstream | 68290 | 22003705 ~ 22015678 (+) | True | LOC120544110 |
| XM_039826536.1 | mRNA | upstream | 82033 | 22000565 ~ 22001935 (+) | True | LOC120575707 |
| XM_039778664.1 | mRNA | upstream | 85452 | 21995436 ~ 21998516 (+) | True | prdx4 |
| XM_039776641.1 | mRNA | downstream | 42793 | 22128250 ~ 22133819 (+) | True | zgc:175280 |
| XM_039778259.1 | mRNA | downstream | 49050 | 22134507 ~ 22143641 (+) | True | kif20a |
| XM_039777822.1 | mRNA | downstream | 127400 | 22212857 ~ 22215288 (+) | True | si:dkey-251i10.1 |
| XM_039778042.1 | mRNA | downstream | 179553 | 22265010 ~ 22333325 (+) | False | LOC120544364 |
| XM_039778036.1 | mRNA | downstream | 191052 | 22276509 ~ 22333325 (+) | False | LOC120544364 |
| TU226958 | other | upstream | 313770 | 21765397 ~ 21770198 (+) | False | LOC120544341 |
| TU226938 | other | upstream | 363103 | 21715699 ~ 21720865 (+) | True | dnajc18 |
| TU226936 | other | upstream | 385587 | 21680193 ~ 21698381 (+) | False | LOC120544614 |
| TU226872 | other | upstream | 475221 | 21599083 ~ 21608747 (+) | True | LOC120544432 |
| TU226694 | other | upstream | 879902 | 21202665 ~ 21204066 (+) | False | mia |
| TU227214 | other | downstream | 56088 | 22141545 ~ 22144199 (+) | False | kif20a |
| XR_005636496.1 | other | downstream | 309059 | 22394516 ~ 22422054 (+) | False | LOC120544391 |
| XR_005636392.1 | other | downstream | 1756080 | 23841537 ~ 23916038 (+) | False | gria3a |
| TU228068 | other | downstream | 1841885 | 23927342 ~ 23928481 (+) | True | G168226 |
| TU228425 | other | downstream | 2324896 | 24410353 ~ 24415769 (+) | False | gab3 |
