RNA id: TCONS_00072249



Basic Information


Item Value
RNA id TCONS_00072249
length 1291
lncRNA type read_through
GC content 0.37
exon number 2
gene id XLOC_035886
representative False

Chromosome Information


Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 39830606 ~ 39843970 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CACAGCTTTCAATCGGTTCTCGGTGCAGAAATCACAGGCCACATCTTCTGGTCCGGCATAACACCGTGGAGGAAGAGCTGGACTGAAGGTTTGCTGCATGTTTTTGACCACCTCAGCCAGAGCAACATTTGTGTTCAGCACTGGACGTGTTTCTGATGCCTGACCACACTGAGGACAAACAAAATCTCCTGCACAATTGTCCCAGAATGCATTAATACAGTCTCTGCAGAAATTATGTCCACATGTGATGGAGGCTGGATCCTTTAACATCGATTTACACAGTGCACACTGTAAGTGATGCTCTGTCCACATTCTAAAAACAACAGCAATTAAAGTCCTTAAATTCAACTTCAAACTAAGTTCATTAACTTTAATGGTTCCTATACACTTGTTAAGTGTAACGTTATGTGAAGCGGCTTACAGGTTCAAGCGATCTATCAAACTGTATAggaagactcaacaaatggtaataataaacgcttacaaagcaatgtaatacttttgaaaatcatgattgcaatatatatgtccatgcctaatatccagtggccagaaagtgattcatattttaaaaattagtacAATATTGGCATCAGTGATGCGGCAAGTCCAGAGACTTACACCATGGttatatataaaattcactttaatgtatgATGTGACAAAAAAGGGTGATAAACGGATATTTTCTcagttcaaatgagtagcggcttggacccagaaacagtatttcatacgtcactacttaacaagcggattatggATTTGTGGGAATTCCCTTTTATGCAGCATATAGCTCTTTATTGTATTGTACTTGAGTTTTAAATCTGAAAGAGCACTGTGTTTACAGTTATTGTCTCTCAAAAAAAGCATTGACTCCAAGTACAAGCTGTTCTCTAAATTGATCTCAAGCCATTTTGTGTTGATATCTGAGTGATCCACTAACATGCAGACTGGTGAAAACATTAAGCCCCCTCCCTGAAACACTGTAGCAAATTAAAGGGGATAGGATCGACTTACGTCACGAGCACGCTGTACTCAAGGTTCTAACTCTAAACCAAATGTCAAATTTTCGGACTAAAATCTGAATTTCTATGACCTATAATGAATAGGTAAACGGAAACAATCAGAAAGTTTTCTCACAAAATCCGAGAGGGACTGTTTGCCAAGtaaaaatggaataaaatgtCAGTGAAAATAGCCTAACCATAACAATATGCATAATGTGTGAAACAACATGATAAAAACATGCTatagaaaaaatacatttagataaatGGCGACAAACAAA

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00070342 lncRNA upstream 69242 39760304 ~ 39761364 (+) True XLOC_035881
TCONS_00070334 lncRNA upstream 196311 39618689 ~ 39634295 (+) False XLOC_035877
TCONS_00070330 lncRNA upstream 495063 39332416 ~ 39335543 (+) False XLOC_035875
TCONS_00070329 lncRNA upstream 495063 39332416 ~ 39335543 (+) True XLOC_035875
TCONS_00072248 lncRNA upstream 593514 39235987 ~ 39237092 (+) True XLOC_035874
TCONS_00070358 lncRNA downstream 658795 40502765 ~ 40526398 (+) True XLOC_035892
TCONS_00072251 lncRNA downstream 691026 40534996 ~ 40538212 (+) True XLOC_035893
TCONS_00072252 lncRNA downstream 734333 40578303 ~ 40590791 (+) True XLOC_035894
TCONS_00071960 lncRNA downstream 1122558 40966528 ~ 40966788 (+) True XLOC_035898
TCONS_00072253 lncRNA downstream 1609648 41453618 ~ 41455928 (+) False XLOC_035904
TCONS_00070346 mRNA upstream 13439 39802506 ~ 39817167 (+) False XLOC_035884
TCONS_00070345 mRNA upstream 32464 39795918 ~ 39798142 (+) True XLOC_035883
TCONS_00070344 mRNA upstream 37210 39770162 ~ 39793396 (+) True XLOC_035882
TCONS_00070343 mRNA upstream 38251 39767915 ~ 39792355 (+) False XLOC_035882
TCONS_00070341 mRNA upstream 64610 39760258 ~ 39765996 (+) False XLOC_035881
TCONS_00070349 mRNA downstream 154497 39998467 ~ 40031011 (+) False XLOC_035887
TCONS_00070350 mRNA downstream 154540 39998510 ~ 40028441 (+) True XLOC_035887
TCONS_00070351 mRNA downstream 236758 40080728 ~ 40163247 (+) False XLOC_035888
TCONS_00070352 mRNA downstream 237433 40081403 ~ 40119817 (+) True XLOC_035888
TCONS_00070353 mRNA downstream 366428 40210398 ~ 40238509 (+) True XLOC_035889
TCONS_00070347 other upstream 14441 39802782 ~ 39816165 (+) True XLOC_035884
TCONS_00070348 other upstream 24176 39806314 ~ 39806430 (+) True XLOC_035885
TCONS_00070326 other upstream 907680 38922317 ~ 38922926 (+) True XLOC_035871
TCONS_00070324 other upstream 1399927 38430563 ~ 38430679 (+) True XLOC_035868
TCONS_00070313 other upstream 2209936 37620554 ~ 37620670 (+) True XLOC_035861
TCONS_00070362 other downstream 1088752 40932722 ~ 40932838 (+) True XLOC_035897
TCONS_00070370 other downstream 1491100 41335070 ~ 41335184 (+) True XLOC_035902
TCONS_00070379 other downstream 1866389 41710359 ~ 41714766 (+) True XLOC_035909
TCONS_00070381 other downstream 2143380 41987350 ~ 41988113 (+) True XLOC_035912
TCONS_00070385 other downstream 2787662 42631632 ~ 42636013 (+) True XLOC_035914

Expression Profile


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