RNA id: TCONS_00070350


Basic Information

Item Value
RNA id TCONS_00070350
length 2165
RNA type mRNA
GC content 0.45
exon number 12
gene id XLOC_035887
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 39998467 ~ 40031011 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTCCAGTGAGATGTCTGAACAGAGAGTAAGCTAAATAGCCATTAGAGAGCTCGAAATCACCTCTTATAGCAACTCTTTCCGCAATCCAATTTAGACTCGACGACTTAATTAGGCGTTGACACTCTTGAAGGGGAGGGCAAACAGCCGCACTTCAGCTCTGCTGCAAACCGGGTGTTAAGCGGTAAAGCGAGCCGCGCCGGATTAGAGAATGGCCAAACGGAAAGAGAAAGTTTGCTTGTGTATAAGCATTCCGCTTTTATGCGCGGTTACGATTATTGTTATCATCTCCGTAGCTCACTTTAACGAAGAATGCGCGGAAGGACTTTACAAGAAAGCAGCAGTGGCAGCAGACTCGGAAACCTGCTCGAAGGTCGGACGAGATATCCTGCAGTCTGGTGGATCAGCGGTAGATGGCGCCATCGCTACTTTACTGTGCACGTCAGTCATAAACCCCCAGAGCATGGGCATCGGCGGAGGCTCTATATTCACAATACGGGAACCAAATGGAAGAGTAAGAATAATCAATGCCAGAGAGGCCATCCCGAAAAATTTCAAAACAGACCTTCTTGCCACGTGTCCAACAACAATACAGCCAATGGAAGgTGCCCATTGGATCGGTGTCCCAGGAGATATTCGTGGCTATGAGCGAGCACACAGACTATATGGACGTCTCCCTTGGGCCTGTTTATTTCAGCCTACCATCAATATGGCTAGAGAGGGCATTCGCATTCCCTATATGCTCTCTCGGTTTTTGCCACTTGTCCTAAAGGAGAAGCCAGAATCACCACTACGCCAGTTATTCCAGAATGAAAAAGGAGAGCTTCTGAAAGAGGGGGACATAGTGAAATTTAACAAACTAGCAGATACGCTTGAGATCATCGCAAAGCACGGAGCAGACGCTTTATACACTGGTGACATCGCCAAAGACCTTGTTAGTGACATACAGGCTGCAGgtGGAACGGTTTCTCTGGAGGACCTGAATTCGTTCAGGGCATCTGAATCAGATGCTTGGGAAGTCAATCTGGGAGACTATGACATGTACTTTCCTCCACCGCCAGCAGGGGGAGCGATACTTAGCTTCGTACTCAACACCATGCTAGGTTTCAATCTAAGTTCCGCATCTCTGGAGGGGGACGAGAAGGTTTTAACATTCCAGCGTTACGTAGAAACCTGTAAATTTGCCAATGGCCTTAAAAAGTTCATGAAGGATCCCAACTTTGCCTCTCAAACGGAGGCGGTTGAGATCATTCAGAAGCATTTCGCCGACAAAGTGAGAGCAAAAATCAGTCCTGACCACAGTTATGATGCCAGCTACTATAACGTCACCCCATATCTGGACTCGCATGGCACTACTCACGTGTCTGTGCTCGCTGAGGATGGCATGGCTGTTTCTGTGACCAGCACCATCAACCACATATTTGGATCCAGGATTTTCTCCTCCAAAACAGGCATCCTCCTCAATAATGAACTTGCAGACTTCTGTGGAAAAACTGATCAGATTCATGCTGgtgaACAGCCGCCCTCCTCCATGTCTCCAGTGGTTCTTCACTCAAGATCTAAGAAGCATATTGTGGTCATAGGAGCGTCAGGGGGCAGTATGATCACCACCGGGGTGGCGCTGACTCTAATGAACTTCCTGTGGTTCGGCAAGACTCTGCAGGACTCCATTGACGCTCCTGTGGTGTTTGTAGACTCCAAAAACGTTCTCAACTTTGAGCCCTCATTTGACAAGTTGTGGAGTCACTTAATAAGATCGGGCACAAAGTCAAAGTCCCACAGATATTTTATAATGTGGTTAATGCCGTTTCAAAGGAAAACCAGTGTATAGTGGCCGTTTCTGActcaagaaaaaaaggaaaagctgCAGGATATTAACCTAGAGTTCAGCTGGAGACAAACTCACTCCAGCTCTTGTGACTCTTCATCATCTGTGCCGTTTTTTGGATAAGAAGTGCATGACAAATAGTTTCAAACACCATCAAAATGGGATTTGTTTTGGTGTACTTTTAGTGAACACCATCAAAATGTGACCTTTTTATGTACTGTGAAACAACtcaacaaaatatttattgtaaatatgcattttttgtATAAGTATGCACAAAATATGTGActgatattttacaatatttaaaatgcagtttTGTGTGTTAGATATCACTTT

Function

GO:

id name namespace
GO:0032355 response to estradiol biological_process
GO:0006954 inflammatory response biological_process
GO:0007283 spermatogenesis biological_process
GO:0006751 glutathione catabolic process biological_process
GO:0034612 response to tumor necrosis factor biological_process
GO:0032496 response to lipopolysaccharide biological_process
GO:1901750 leukotriene D4 biosynthetic process biological_process
GO:0005886 plasma membrane cellular_component
GO:0000048 peptidyltransferase activity molecular_function
GO:0036374 glutathione hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080226-1 Predicted to enable glutathione hydrolase activity and peptidyltransferase activity. Predicted to be involved in several processes, including peptide metabolic process; response to estradiol; and response to tumor necrosis factor. Predicted to be active in plasma membrane. Orthologous to human GGT5 (gamma-glutamyltransferase 5).

Ensembl:

ensembl_id ENSDART00000134452

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072249 lncRNA upstream 154540 39830606 ~ 39843970 (+) False XLOC_035886
TCONS_00072250 lncRNA upstream 154540 39830608 ~ 39843970 (+) True XLOC_035886
TCONS_00070342 lncRNA upstream 237146 39760304 ~ 39761364 (+) True XLOC_035881
TCONS_00070334 lncRNA upstream 364215 39618689 ~ 39634295 (+) False XLOC_035877
TCONS_00070329 lncRNA upstream 662967 39332416 ~ 39335543 (+) True XLOC_035875
TCONS_00070358 lncRNA downstream 474324 40502765 ~ 40526398 (+) True XLOC_035892
TCONS_00072251 lncRNA downstream 506555 40534996 ~ 40538212 (+) True XLOC_035893
TCONS_00072252 lncRNA downstream 549862 40578303 ~ 40590791 (+) True XLOC_035894
TCONS_00071960 lncRNA downstream 938087 40966528 ~ 40966788 (+) True XLOC_035898
TCONS_00072253 lncRNA downstream 1425177 41453618 ~ 41455928 (+) False XLOC_035904
TCONS_00070346 mRNA upstream 181343 39802506 ~ 39817167 (+) False XLOC_035884
TCONS_00070345 mRNA upstream 200368 39795918 ~ 39798142 (+) True XLOC_035883
TCONS_00070344 mRNA upstream 205114 39770162 ~ 39793396 (+) True XLOC_035882
TCONS_00070343 mRNA upstream 206155 39767915 ~ 39792355 (+) False XLOC_035882
TCONS_00070341 mRNA upstream 232514 39760258 ~ 39765996 (+) False XLOC_035881
TCONS_00070351 mRNA downstream 52287 40080728 ~ 40163247 (+) False XLOC_035888
TCONS_00070352 mRNA downstream 52962 40081403 ~ 40119817 (+) True XLOC_035888
TCONS_00070353 mRNA downstream 181957 40210398 ~ 40238509 (+) True XLOC_035889
TCONS_00070354 mRNA downstream 247389 40275830 ~ 40285537 (+) False XLOC_035890
TCONS_00070355 mRNA downstream 256532 40284973 ~ 40288223 (+) True XLOC_035890
TCONS_00070347 other upstream 182345 39802782 ~ 39816165 (+) True XLOC_035884
TCONS_00070348 other upstream 192080 39806314 ~ 39806430 (+) True XLOC_035885
TCONS_00070326 other upstream 1075584 38922317 ~ 38922926 (+) True XLOC_035871
TCONS_00070324 other upstream 1567831 38430563 ~ 38430679 (+) True XLOC_035868
TCONS_00070313 other upstream 2377840 37620554 ~ 37620670 (+) True XLOC_035861
TCONS_00070362 other downstream 904281 40932722 ~ 40932838 (+) True XLOC_035897
TCONS_00070370 other downstream 1306629 41335070 ~ 41335184 (+) True XLOC_035902
TCONS_00070379 other downstream 1681918 41710359 ~ 41714766 (+) True XLOC_035909
TCONS_00070381 other downstream 1958909 41987350 ~ 41988113 (+) True XLOC_035912
TCONS_00070385 other downstream 2603191 42631632 ~ 42636013 (+) True XLOC_035914

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000053_05435608_05443587.mRNA False 3238 mRNA 0.38 11 CI01000053 5435479 ~ 5445226 (+)