RNA id: TCONS_00072252



Basic Information


Item Value
RNA id TCONS_00072252
length 740
lncRNA type sense_over
GC content 0.46
exon number 5
gene id XLOC_035894
representative True

Chromosome Information


Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 40573137 ~ 40590816 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


TGAACTGCACTTCCTGTCAGTATGGGCTGTTTACATGTCTGTCAGCCAAACCACCACTAGACTGTGGAGAGCATCATCTTGAGGCAGATGAAGGAGAGGAGGTGGTGCTGGATTGTTTTCTGTCTTGGCACACTCTTGTGGTGGGACAGACTGAGTATCATTATTCCTGGCATCCTGGAGAAACAAATgTGTTATTTGACGGAGAGTATGAAGAGCTAGTGGTGACAAAAGAGTCTAAAATCGTCCTCAATCAGCTGAGTGTCAGTGAGGAAGGCTCATACCGCTGCCTTCTAAAGGACCAAAAGGGTACTGCACTGTCCCGCACGTTCTTCCAACTAGAAGTCAAGCCATTTCCATCCACAAGCCCTAGACAGGTTGTGACATTGCCGTCTTTACCCTTGGGTTATGAAAACACACCTTACAGCCTTCAGAAGAGCAGTTTCCTCACTGTACTAATTTTGCTGACTGTACTCAGCATCACAGGCAGCCTCATCATCATAGAGTACCTCAGAAAGAGCCTGAAGCGGCAGGAGGAGGCGAGAGGGAGAGACAGCAGGACAGCAGGAGATATAGAGCTCAACACTGAATGACGGATCACATCCAGACACATGCAGGAATAAAGACAGATGAGTTTCTACTGTTCCAGTTTGAAGATGACACGCAGCCAGAACGCTCAAAGTATTTAGAAAGGCCTTATTATATATTCTGCACTAGATCAAATAAATACTGCATGATAGCAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00072251 lncRNA upstream 40091 40534996 ~ 40538212 (+) True XLOC_035893
TCONS_00070358 lncRNA upstream 51905 40502765 ~ 40526398 (+) True XLOC_035892
TCONS_00072249 lncRNA upstream 734333 39830606 ~ 39843970 (+) False XLOC_035886
TCONS_00072250 lncRNA upstream 734333 39830608 ~ 39843970 (+) True XLOC_035886
TCONS_00070342 lncRNA upstream 816939 39760304 ~ 39761364 (+) True XLOC_035881
TCONS_00071960 lncRNA downstream 375737 40966528 ~ 40966788 (+) True XLOC_035898
TCONS_00072253 lncRNA downstream 862827 41453618 ~ 41455928 (+) False XLOC_035904
TCONS_00070373 lncRNA downstream 914799 41505590 ~ 41519281 (+) True XLOC_035905
TCONS_00072254 lncRNA downstream 980141 41570932 ~ 41574534 (+) False XLOC_035907
TCONS_00070375 lncRNA downstream 980239 41571030 ~ 41574534 (+) True XLOC_035907
TCONS_00070356 mRNA upstream 87710 40476811 ~ 40490593 (+) False XLOC_035891
TCONS_00070357 mRNA upstream 92980 40477264 ~ 40485323 (+) True XLOC_035891
TCONS_00070355 mRNA upstream 290080 40284973 ~ 40288223 (+) True XLOC_035890
TCONS_00070354 mRNA upstream 292766 40275830 ~ 40285537 (+) False XLOC_035890
TCONS_00070353 mRNA upstream 339794 40210398 ~ 40238509 (+) True XLOC_035889
TCONS_00070360 mRNA downstream 38135 40628926 ~ 40633991 (+) True XLOC_035895
TCONS_00070361 mRNA downstream 54047 40644838 ~ 40646418 (+) True XLOC_035896
TCONS_00070363 mRNA downstream 444439 41035230 ~ 41173369 (+) False XLOC_035899
TCONS_00070364 mRNA downstream 446750 41037541 ~ 41173369 (+) False XLOC_035899
TCONS_00070365 mRNA downstream 447350 41038141 ~ 41172940 (+) False XLOC_035899
TCONS_00070347 other upstream 762138 39802782 ~ 39816165 (+) True XLOC_035884
TCONS_00070348 other upstream 771873 39806314 ~ 39806430 (+) True XLOC_035885
TCONS_00070326 other upstream 1655377 38922317 ~ 38922926 (+) True XLOC_035871
TCONS_00070324 other upstream 2147624 38430563 ~ 38430679 (+) True XLOC_035868
TCONS_00070313 other upstream 2957633 37620554 ~ 37620670 (+) True XLOC_035861
TCONS_00070362 other downstream 341931 40932722 ~ 40932838 (+) True XLOC_035897
TCONS_00070370 other downstream 744279 41335070 ~ 41335184 (+) True XLOC_035902
TCONS_00070379 other downstream 1119568 41710359 ~ 41714766 (+) True XLOC_035909
TCONS_00070381 other downstream 1396559 41987350 ~ 41988113 (+) True XLOC_035912
TCONS_00070385 other downstream 2040841 42631632 ~ 42636013 (+) True XLOC_035914

Expression Profile


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