RNA id: TCONS_00070365


Basic Information

Item Value
RNA id TCONS_00070365
length 2501
RNA type mRNA
GC content 0.52
exon number 22
gene id XLOC_035899
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 41035230 ~ 41173369 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTTTATGCGCGTTCGTGTTGATGACCCGTGCGCGTGAACTACATCTGACTCACAGCTTCAGAGAGATGCTCGTGGTTGTACGGTCTCGTTAGTGAGCAGaaTTTCTCTGATGGTAGAAAACCTATTTGGAAGAATCATGAACCAAGTCTGTGAAAATCCATCTAGTCAAAGAGACGTTACTCTCCAGCCCAAGCGCCCTGCGTTGTCGTGGGGTGTGAAAATCAAAAGGAAGTTGAAGAGCGTGGCGCCTTTCCTGGGCAGATTCAGACCGCTGGTCGGACAGTGCTGTCACCAATGCACCCCCGAGAGTctgGGTCTGAAGCTGCTGTGCAACACTCCTCCTCTGGGCTTTCAGAACTTGACGTGTGTGAACGAGACACACACCGGGTACCGTGGCTGGTTAGTAAGAAGGGTGTGCTGTTTGCTGTTTGTGTGGGGTCGTGAGGTTCACCCCGGCCCGGCTGGAGACAGACGGCACAGAGTCCATAGCAGTGAGAGAGTGAAGAAGGCTTTAGTGACGGCATGTTCCTCAGATGAGACCAAAGCCATGGAGCTGGAGATGCCTGAGGTCAGAGGTCATTTAGACACAATTCTGGCCGTCACACAGACCTTCATCTCTCCCAGCTTACTCAGGCTGGTGAACTGGTTGCTGCTGAAGATCTTCGATTTAATGTTCTGCAATGTGCAGATCAACCTTAACCAGGTGGCAGCCTTACGCCGTTCCACACAACTGaaaGCCCCTCTGGTCTATGTGTGTGTTCGGCAGAGCAGCATCGATCACGCTCTTATTTGTCTCACTCTCTTCTGCCACAACTTGAGGGTTCCCTACACCATTTTTCCAGCCCACGTTCGACAAACCTGGTTAAGGTCTATCCTTCAGAGGCTGGGTGTCGTTTTGCTCCCAGAAGGCAGTGGCTCAGAGCGAGACGCTGAGATGGACAGCCTCTATTCTCCAGTCATGACCTCTTTCATCGGTGAGCTGTTACGAGGGGGCGCTTCTCTCTGCGTGGGCATCTCTACAGCCGAAGGTCACAGCGGGCAGTGGCTGGCGCGTGTACATCAGGCCATCAGTGACGGTCTAGTGCCCGATGTTTGCATTGTGCCAGTGGGCATTTCCTATGATTGCCTGCCATGCCACGTTATACGTTCACAGGCCAGCGTTATGTCTGCTCTGGGGTTTGCGCTCTCCCTGCTGAAGGGTGATCACAGAGGAAGTGTTAGGATCCATTTCGCACAGGCTTTCTCTCTGAAGgaGATGTGTGAGAGTGGAAAGTGTCGTGTGGATGGAGGGCGCCCCCTACAGGACCTGCTAATGACCGCCATTGTGCACAACAGGATGGACTCCATCTTCAGCCAGAAGGATGTTTCCTGGCTCCTCCCAGACGCTGTTATGCCTGAACTCCCTCCAGCTCATAGACAGCAGACTATCGCTCTGACTCTTCATCTCATCTACTCCTCTACTACAAATATGGCTGTCATGTCTACCAGTCTTGTATCCTGTTTGCTGCTTCACAAGCATCGCAAGGGCGTGCGTGTGTCCATGCTGTGCCGGGACATCTGCTGGCTGTTGGAGGAGGTGTTGTTCAGAAACACAGACGTGGGTTTCGGTGGCTCTCTGGTTGGGCTGGTACATCACGCGGTGTCTCTGCTACGCCCGTATCTGCTTCTGGCTGCGGCTCCACCTACAGGAGAGCCCATCATTGCACCACGGTCCGATCCAGACTCTCTGCTCATACTGAGCAAGCAGTGCGATGTGATCACTCGTGTCTTCATACACGAGGCTGTAGGAGCGTGTGCTGTTTCAGCCATGCTGAGTGAGGTTGTAGGCTGTGGAGGAGGTGAAGACCTGGAGTTTGATGCCGTTCTGGGTCAGAACGAACTGACAGAGAAAAGCCTCCAACTCACACATTTACTCTCACCCGGATACATACcaccgtGTCAGAATGCTCATAGCTTTGCTCTTGATGTTGTGGACAGCATGGTGCGCTGTGGGGTTCTGGTTATGGAGGAGgTCCAGACAGATGCACCGGTGTGTGACTTCATGAAGAGGCATGGTGTGTTATCATGGACTGTTTCAGACAATCCTGATGAGAGCAGCGATTCAGACTGTGAGGAACCAGACATACACACCTACAAGTTGAGTCAGCCGTCTCAGTGCCCGAAGCTGCTCTTCTTTCTATGTAGTTTACTGAGTGTCCAACTGAGAGCTCTGTGCTGGGCGCTGGAGAGCCTTCATTACCTCCCATTGCCCATCACTgAGAAAGACTGTTTGAGCCAACTACACACACACTTGAAGAACCGAGCTCAGCTGGATGGAGCACGCTACGAGAGCTCATCTATCGACTTGGTGAAAATGGCTCTTCGTACCTTCATTGATCTCGGGGTGCTGATTGAGGACAGGCAGAGGGAAGATGTGTATCTCGACGCCAATCCGCTCTTCTCGCAGGGCGCTTACAAAGAGAAACTCGTGCTGTTTTTCAAACAGttcatgtttaactga

Function

GO:

id name namespace
GO:0006631 fatty acid metabolic process biological_process
GO:0006072 glycerol-3-phosphate metabolic process biological_process
GO:0044255 cellular lipid metabolic process biological_process
GO:1990511 piRNA biosynthetic process biological_process
GO:0019432 triglyceride biosynthetic process biological_process
GO:0008654 phospholipid biosynthetic process biological_process
GO:0031966 mitochondrial membrane cellular_component
GO:0004366 glycerol-3-phosphate O-acyltransferase activity molecular_function
GO:0008374 O-acyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050309-118 Predicted to enable glycerol-3-phosphate O-acyltransferase activity. Predicted to be involved in several processes, including glycerol-3-phosphate metabolic process; piRNA biosynthetic process; and triglyceride biosynthetic process. Predicted to act upstream of or within cellular lipid metabolic process. Predicted to be active in mitochondrial membrane. Orthologous to human GPAT2 (glycerol-3-phosphate acyltransferase 2, mitochondrial).

Ensembl:

ensembl_id ENSDART00000075620

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071960 lncRNA upstream 71353 40966528 ~ 40966788 (+) True XLOC_035898
TCONS_00072252 lncRNA upstream 447350 40578303 ~ 40590791 (+) True XLOC_035894
TCONS_00072251 lncRNA upstream 499929 40534996 ~ 40538212 (+) True XLOC_035893
TCONS_00070358 lncRNA upstream 511743 40502765 ~ 40526398 (+) True XLOC_035892
TCONS_00072250 lncRNA upstream 1194171 39830608 ~ 39843970 (+) True XLOC_035886
TCONS_00072253 lncRNA downstream 280678 41453618 ~ 41455928 (+) False XLOC_035904
TCONS_00070373 lncRNA downstream 332650 41505590 ~ 41519281 (+) True XLOC_035905
TCONS_00072254 lncRNA downstream 397992 41570932 ~ 41574534 (+) False XLOC_035907
TCONS_00070375 lncRNA downstream 398090 41571030 ~ 41574534 (+) True XLOC_035907
TCONS_00071961 lncRNA downstream 621853 41794793 ~ 41805558 (+) True XLOC_035911
TCONS_00070361 mRNA upstream 391723 40644838 ~ 40646418 (+) True XLOC_035896
TCONS_00070360 mRNA upstream 404150 40628926 ~ 40633991 (+) True XLOC_035895
TCONS_00070359 mRNA upstream 447325 40573137 ~ 40590816 (+) False XLOC_035894
TCONS_00070356 mRNA upstream 547548 40476811 ~ 40490593 (+) False XLOC_035891
TCONS_00070367 mRNA downstream 56293 41229233 ~ 41256529 (+) False XLOC_035900
TCONS_00070368 mRNA downstream 65124 41238064 ~ 41255858 (+) True XLOC_035900
TCONS_00070369 mRNA downstream 108861 41281801 ~ 41342918 (+) True XLOC_035901
TCONS_00070371 mRNA downstream 240979 41413919 ~ 41440689 (+) True XLOC_035903
TCONS_00070372 mRNA downstream 280751 41453691 ~ 41462732 (+) True XLOC_035904
TCONS_00070362 other upstream 105303 40932722 ~ 40932838 (+) True XLOC_035897
TCONS_00070347 other upstream 1221976 39802782 ~ 39816165 (+) True XLOC_035884
TCONS_00070348 other upstream 1231711 39806314 ~ 39806430 (+) True XLOC_035885
TCONS_00070326 other upstream 2115215 38922317 ~ 38922926 (+) True XLOC_035871
TCONS_00070324 other upstream 2607462 38430563 ~ 38430679 (+) True XLOC_035868
TCONS_00070370 other downstream 162130 41335070 ~ 41335184 (+) True XLOC_035902
TCONS_00070379 other downstream 537419 41710359 ~ 41714766 (+) True XLOC_035909
TCONS_00070381 other downstream 814410 41987350 ~ 41988113 (+) True XLOC_035912
TCONS_00070385 other downstream 1458692 42631632 ~ 42636013 (+) True XLOC_035914
TCONS_00070387 other downstream 1544064 42717004 ~ 42723824 (+) False XLOC_035915

Expression Profile

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