RNA id: XM_039777948.1


Basic Information

Item Value
RNA id XM_039777948.1
length 4850
RNA type mRNA
GC content 0.53
exon number 19
gene id robo4
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 32829315 ~ 32868069 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCTGCGCTAGCTTGACGTCGGTGCGCTTACAGAGCGCAGTAGTAAATGAAGTTGGCGCTGATATTCattctttaactgtctatgtaTTCATTATGGGACGGTATTTTTCAAGAGGAGTAGTAAGTGAACTGTAATGCTGTTATAGttaaaaagaacagaaagagaCACTGGTTTATTAAAGCTGGACATCCAGTTAAACCCCGTATAGTTCCAGTAAGACTATTACACGTTATTTATCAGCTGGCTCGGACTGGGAAGTATCTCTATGACTGGTAACTTGGCTGATAATGATAAGCCCACGTGTTTTCATCAGCATATTGGCATCAGTGTTTACACTTCTTCTGTCAGGTTCCAGAGTTCATGCACAGGAGACGCCGCCCCGCATCGTCCACCAGCCCTCTGACGTGGTGGTGAAAGCGGGAAACCCTGCCACGCTCTCCTGCCGGGCGGAGGGCAGCCCCAGGCCGAGCATCGAGTGGCTGCGGAACGGCCAGACGCTGACAGCAGACGAACGCTTGCAGCCCTTGGTTCTGTCGGAGGGGAGCCTCTTCTTCCTCAGCGTGGGAGAGGGCAGGCGAGGCCTGTCGCACGAGGGCGTCTACACCTGCGTGGCCCGGAGCAGTGCAGGAGAGGCCAGCAGCCGCAATGCATCGCTGTACATCGCAGTGTTGCGGGAGGAGTTCCGTGTGCAGCCCGGTGACGTGGAGGTGGCAGAGGGGGAGGTGGCTGTCTTAAGCTGCGTCCCCCCAGTGGGACGCCCTGAACCTAATGTCGTCTGGAAGAGGGACGGCTTGCCCATCGACTACGTCGATCACCGCTATACCGTGCTGAGTGGGAAGCTTATCATCGCTCCTGCCGAGAGGAAACACTCTGGAGCGTATGTGTGCGAGGCCAGCAACACCGCGGGGGTGAGGCAGAGCCGGGCGGCTCGGCTCTCTGTGCTCGCCAAGCCTGTGTTGGTGCTGAAGCCAGAAAACGTGTCTGTGCGAGTGGGGGAGTCTGCCCAGTTCTACTGCCAAGCTAAAGGTGACCCCCCCCCTGCTGTGGTCTGGAGCAGTGAGCAGGGGCCGCTGCCCAACGGCAGGTATCTTGTAAACCCGGACCAGACTCTCCAGATCCACTATGTGACAGCCCAGGATGCTGGCAAGTACACCTGCTCTGCTGCCAACGATGTCGGTGTGGTCACTGCCAGCGCACAGCTGCTAGTTGAAGAGGCTACCAGCACTACACAGAGAGATCTCCACAAAGAGCTGTCAGCGCTGCGAGTTGCTCTGGAAAATGTCACCATCATGGCCCCCGGGTCTAATATCTCACAAGTACAATGGAAGCTCCAGACGCTGCCCGCCCAGCCTCATTACCTGGATGGCTTCGAGGTTCTCTATCGCTCTCTGCTCCCCGCCAGCTCGGACTGGGCAGCCAAGAAGGTGACTCTGCCCAACTTCCAGGCCCCGGTGGGCCCCTTAAAGAGAGGCTACAAGTACGAGTTCAAAGTCCGTCCCTACGGCAGCAACTTGTATGGGAGGGAGAGCAACACTCGGCACCTCAGAGTCCCTGAGACAGTGCCCAGTGCCTCTCCACTGGCTGTGTCCATAACAGTGAGCCGTGAGCAGAATAACACGATCCATTTGAGCTGGGAGCCTCCTCCTCATGAGACCCACAACGGTATCATACAGGGTTACCAGGTGTGGTGTGTGGAATCTGAGGAGCAGCAGTACCAAAACTGGACAGTGGATAGTGGCCAACACAAGCTTGATATATCTGCTCTGAGTCCAGGGAAACGGTACTGGATCACCATAGCAGCTGTCAACGGAGCTGGAGTAGGAGTGCTGAGTGACCCTCATGGATTTGTCATCAGCCCACAAATAGGCGGTCCCCCCGGGTCAGACAGCCAGATGCGGGATCTGTCCCGGGTCCTGGCCCTGCTTCAGGACCCGGTGTTGATCGGCAGCGTCGGTGCCATCCTGTGGTGCCTTCTGATGGTCGCAGCCGTGTACCTCTTCAGGCGCCATGGCAGGACAGGCCAGCTGATCCCAGGACACGGCAGGGCTAAAGGTTTGCACAGACCAGCCAGTGAAGATctcatcataaaacacagGATGGCAGCTTCAGACTCTCCGTGGGCCTCTGGAGCCTGGAGACCTTCCTTCAACCACAAGTACCAGGACTTATGGGCCCAGGGCCAGAAACACCCAGGGATCAGGGGCGCCAGCCTCCCTGTGTCCTGGAAGGAGCCCAGCTGTGTGGACTCGGCCGTCCCCATTGTGACCGACAGCTGTGGCGTTTACGGCACATTTTACGTGGACCTGATGGGCAAAGGCCTCAAGACCTTCAACAGTCCCGGGCGGCGCCCGAAAATGCCTCATGGTCAGGCCCACCAGCAAGGAGCTGAGACCATCCAGATATTCCCTCAGCCTGTCGCAAAGACCTCGCCCCTCAGCAGCCGGGAGGCGCTACCATGGAAACAGGCCATACGCCCCCAGCCCAAGATGGGTGTGCTGAGGGAGTCATGGGAAAAGAACTACAGCAAGCAAGAGTTGCACGCAGTGAACAGCGTCCCCATAGTGCCGACCAGGAAGCAGGCTTTACCATCCAGTGTCTACAAACAGAGACTCAGTCACATACCGTCAGGCCGGCACGGTGGATACCCAGAGTGTGATAAAGTTGCTGGCTGCCCTCGCCTGCTGCATTACTCTGCATCTTTACACCTAGTGGACATGCTACCCCCCCCTCCACCAATGCCCATAGAGGACACCACGGACACACACAGCCTCACCTCAGATGAAGGCTCCAGTCGTTCTACAAAGCTAACAGTGGACATGGGCTCTCTCCAGTCAGTGTGTGCTGCGTCAAATCCCCGCCGGCAACCGGGACCcaaaaccaccaccaccaccaccaccaacagcagcagcagcagcagcagctttcccTCCTACAGCCACCCGTCTGCTACATCATATTCCATGTCGCTGGACGAGGAACAGGGCGGCACGCTGACAGCACAGGAAGCCAGCCAGTATCTGGAGCTCTGCCCCAAACCGGAGAGATGCAGCAGTGCCCTGCCTCAGCAGCGTCCGTCCCTGTCCGTCCCTTTCCTCCCCCCCGTGGGCTACATCCGTCGGCCGGGCTGCTCCACTCAGCTGGAGGATGACCCCGCCCCCGCGGGGCCTGAGGCTCCGCCGATTGGCCTGCGACGCGCCCGCCTCCAGAGCACGCCCTCCTCCTGCTACAGCGAGTGGGACGGCTCCCTGTGGAACAcctggagctcagtcacggacAGCAACATGGCCAGCGCTCGCTCCAGCCTCATCAGCTCGGTGGACAGCTGCTACACCGGCGACAGCGCACACTTCGCCCGCCTGCTGGCGGCGGCGGCCGAGAGCATGAGCGGAGCCTCTCTGTCAGGCAAAGAGCCGTTCTGTTTCAACATAATCTCTCTCCACTCTGTATTGAAATGCATGTCAACATGTGGTCCTTCTCTGTGTTCAGACTTCTCTCCGCCCGCCTCGCCCCTCAGCGCCTTGTATCCGTCGTTTGGCGCGGAAGGCGACTCGTTCTGCGAGCTGGAGCCCGTCCCTGCGTGGGACTGGAGCGTGGCCTGGGTGGAGGAAATGGAGGCTCAGTACAGAGCACACTATCCCGGCAGAAACCCCAAACCCTTTGACGCTTAGGGACTCCTGCCAGGAGAGTAAAAAGATACGACAGAACTTTAGAAAACACCTCACAGCAACGTCAGAACTGCACAGACGAAGAAGAAGGGGGCAGACATCATACTGCAACTGATTCCCTTTTTTTGTGATAGCGCTGGAATTTTTAAGGTCTAAATAATTCAGGGTTTGATGTGTGGCGTCAATCATAGATACATAGGTGGATTTTAAAATAGAATTGGAGCCAACTCCTTGATGTTTGAGACACCTCTGCTAGATGACGCACGGCTGTTATTTAGTTTGTTAATAGTTACCCAGTTTACCTCAGGGCAGTGCGGCTACTATTTAGCATCCTTAAAATGAGTTCCACTGAGTTTCTAaagttttcttttcctctctttatCCTGTCCACTCATTAGAGGATGGGATAATGAGATACTTCTCACCCAGTGTGTTTTTGAACAGgccagaaagacacaaagacaggatGCCAGACAGTGAGAAAGCAGTCATTAGGCAGAAGAAATACGCCACTGGAGTTCTCCTGACAGCACACGGTTGTTTGCTGCAAGACTTTATTAGGGCCTTAGTTCTCCCAAACAGGGAGTGATTTTGTACAGACTGCTTTACTGATCAAGTGTATATATTCAGCATTATTCaacaaatgttatttaaaaaaacaaacgtaAAACACATTCCAAATTGTTTTCTGTCTTCCTCCAGTTATTTTTGGTGATTTCTTACATTCTGggatttcttttatattttaagattttttttttttttttactttatacctttttactttttttttattgttacacAAAGTTTTCAGACAGAACATTCTGTAAGAGAATAGCAAAAGTAGAAAGTTATTTTGTTAACAATTATTTGAACTAACTCGACCTTTAAATATCTTGAATTTTAGGAAGCATTCAACAGAAAGTATGGTGAGAGTTGAAGTGCTGTACGCACAGATTAGTCTGATGATTTTACTAATGGTAGTAGAATCAaggttttacattttataagaATTTGCATTGTGTTTTGTTCACACTACAGATGTGTTTTATAGTTTGGAATAAAATTGTTTAATTAATAGAAATCAAGTGTGACATTTTGCAAGGACTTTACATGTGGAATGTGTCCTGGCTGAGCGGTGTAATAAAAGCTCATGTTGCATTTATGTACGCAACAATGTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636419.1 lncRNA downstream 361248 32453705 ~ 32468067 (-) False LOC120543978
XR_005636420.1 lncRNA downstream 361935 32453705 ~ 32467380 (-) False LOC120543978
TU231177 lncRNA downstream 413114 32410272 ~ 32416201 (-) True G170523
TU231175 lncRNA downstream 423693 32405341 ~ 32405622 (-) True G170521
TU231174 lncRNA downstream 425867 32403214 ~ 32403448 (-) True G170520
XR_005636523.1 lncRNA upstream 42623 32906358 ~ 32908784 (-) True LOC120544610
TU231305 lncRNA upstream 197747 33061482 ~ 33061700 (-) True G170626
TU231306 lncRNA upstream 229293 33093028 ~ 33093318 (-) True G170627
TU231358 lncRNA upstream 637545 33501280 ~ 33505814 (-) True G170673
TU231363 lncRNA upstream 688485 33552220 ~ 33552511 (-) True G170678
XM_039778275.1 mRNA downstream 239987 32578097 ~ 32589328 (-) True LOC120544484
XM_039777929.1 mRNA downstream 262273 32493060 ~ 32567042 (-) True esama
XM_039777962.1 mRNA downstream 685228 32099217 ~ 32144087 (-) True LOC120544316
XM_039777394.1 mRNA downstream 738874 32078976 ~ 32090441 (-) False vps26bl
XM_039826459.1 mRNA upstream 12553 32876288 ~ 32884667 (-) True tmem218
XM_039777410.1 mRNA upstream 521679 33385414 ~ 33388408 (-) True LOC120543965
XM_039777165.1 mRNA upstream 709979 33573714 ~ 34100246 (-) False ntm
XM_039777169.1 mRNA upstream 709979 33573714 ~ 33734525 (-) False ntm
XM_039777168.1 mRNA upstream 709979 33573714 ~ 33734448 (-) False ntm
TU231185 other downstream 338010 32443286 ~ 32491305 (-) True LOC120543978
TU231114 other downstream 627109 32201709 ~ 32202206 (-) True G170463
TU230664 other downstream 1870817 30957501 ~ 30958498 (-) True G170098
TU230602 other downstream 1978302 30849319 ~ 30851013 (-) False LOC120543892
TU230603 other downstream 1999372 30829067 ~ 30829943 (-) False LOC120543890
XR_005636561.1 other upstream 1415567 34279302 ~ 34279394 (-) True LOC120544758
XR_005636560.1 other upstream 1417190 34280925 ~ 34281017 (-) True LOC120544757
TU231512 other upstream 1445259 34308994 ~ 34309714 (-) True G170802
XR_005636548.1 other upstream 2874258 35737993 ~ 35738183 (-) True LOC120544743
XR_005636576.1 other upstream 2874734 35738469 ~ 35738586 (-) True LOC120544776

Expression Profile