RNA id: XM_039778469.1


Basic Information

Item Value
RNA id XM_039778469.1
length 2696
RNA type mRNA
GC content 0.50
exon number 20
gene id pygma
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 21435673 ~ 21446992 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTCTAAACCCTTGTCTGACCATGATAGAAGGAAACAGATTTCAGTGCGAGGCCTCGCCGGCGTTGAAAACATTTCACAATTGAAGCTAGATTTCAACAGACATCTCCACTTTACGCTGGTCAAGGACAGAAATGTGGCTACCAGAAGGGATTACTACTTTGCTCTTGCCAACACTGTGCGGGAGCACTTGATTGGCAGGTGGATCAGAACCCAGCAGCACTACTATGAGAAAGATCCCAAACGCGTGTACTACATCTCCCTTGAGTTCTACATGGGCCGCGCCCTTCAAAACACCATGGTGAACCTCGCACTGGAGAACGCCTGTGATGAGGCCATGTACCAGTTGGGTCTGGACATGGAGGAACTGGAGGACATGGAGGAAGATGCTGGCTTGGGAAATGGTGGCCTGGGACGCCTTGCCGCCTGTTTCCTGGACTCTATGGCTTCACTGGGTCTGGCTGCCTATGGTTACGGTATTCGCTATGAATTCGGTATCTTCAACCAAAAAATCATCAATGGCTGGCAGGTTGAGGAGGCTGATGATTGGCTGCGCTATGGCAACCCCTGGGAAAAGGCACGTCCTGAGTACATGCGTCCAGTGAACTTCTATGGCAGGACAGAGCATCACCCCGATGGTGTCAAATGGGTTGACACTCAGGTAGTGCTGGCTTTGCCATATGACACCCCTATCCCCGGCTACAGAAACAACGTTGTCAACACCATGAGGCTGTGGTCGGCGAAGGCGCCTTGCGATTTTAACCTAAAAGACTtcAATGTCGGTGGCTACATTCAAGCTGTTTTGGACAGAAACTTGGCTGAGAACATCTCCCGTGTGCTGTATCCCAACGACAATTTCTTTGAAGGAAAGGAGCTCCGTCTGAAGCAGGAATACTTTGTGGTGTCTGCCACCCTGCAAGACATCATCCGTCGTTTCAAGGTCTCTAAGTTTGGCTCCAGGGAGATTGCTCGCACAGACTTCAGCAAACTGCCTGACAAGGTTGCCATCCAGCTGAATGACACTCACCCAGCCATGGCTATTCCTGAGCTGATGAGGGTTCTGGTTGATGAGGAGAAACTTGAATGGGAAAAGGCATGGGACATCTGTGTGCGCACCTGTGCCTACACCAATCACACCGTACTTCCTGAAGCTCTGGAGCGCTGGCCAGTCGATCTGTTTGCTTATCTGCTGCCTCGTCACCTGGAAATTATATATGAGATCAACCGTCGCCACCTGGAGAGAGTTGCTGCCAAGTATCCTGGTGATCATAATCGTCTGTGCCGCATGTCCCTCATTGAGGAAGGCGGACAAAAGAAGATCAACATGGCCCATTTGTGCATTGTGGGTTCCCATGCTGTCAACGGCGTGGCCCAGATTCACTCTGACATCCTCAAAGCTACTGTTTTCAAGGACTTCTATGAAATGGAGCCACATAAGTTCCAAAACAAGACCAACGGCATCACTCCTCGACGCTGGCTGGTCATGTGCAACCCCGGGCTGGCTGAGGTCATCGCCGAGAGAATCGGTGAGGACTTCATCCGTGACCTCGACCAGCTGAAGGGTCTCTGCAAGTACGTGAATGATGAGGCTTTCATTCGTGATGTTGCCAAAGTGAAGCAGGAAAACAAGATGAAGTTTGCTGTCCACTTGGAGGAGCACTATAAGGTGAAGATCAACCCCAACTCCATGTTTGACCTACAAGTCAAGAGAATCCATGAATACAAGAGACAGCTGCTGAACTGTCTGCACATCATCACCTACTATAACCGCATCAAGAAGGAGCCTAACAAGCAGTGGACTCCAAGAACTATCATGATTGGAGGAAAGGCTGCTCCTGGATACCACACTGCCAAGATGATTATCCGCCTGATCACAGCTATTGGCGAGGTGGTCAACAATGATCCTGTGGTCGGGGACCGTCTCAAAGTCATCTTTTTGGAGAATTACAGAGTCACACTGGCAGAGAGAGTCATTCCCGCATCCGACCTGTCAGAGCAGATCTCCACAGCTGGCACTGAGGCCTCTGGCACCGGCAACATGAAGTTCATGTTGAATGGTGCTCTAACCATTGGTACCATGGACGGAGCCAATGTTGAGATGGCCGAGGAGGCCGGCATGGACAACATTTTCATCTTTGGCATGAGGGTGGAAGACGTTGATGCACTTGACAAGAAAGGTTACCACGCCGAAGAGTACTACAACCGCCTGCCTGAGCTAAAACAGGCTATTGACCAGATTGCTGGAGGCTTCTTTAGCCCAAAGCAGCCTGACCTGTTTAAGGAAATTGTCAACATGCTGATGCATCATGACAGATTTAAGGTCTTTGCTGACTATGAAGACTATATCAAATGCCAGGAGAAAGTCAATGCTCTTTACAAGAACCCCAAGGAATGGACCAAGAAGGTGATTTACAACATTGCCGGATGTGGCAAATTCTccagtgatcgcaccattgctCAGTATGCTCGTGAGATCTGGGGCATGGAGCCCACACTTGAGAAACTCCCCGCCCCTGATGATAAGCAATAAACTGTCCACATGATGGCACAACACCCCAACTTTCCCCGCTTGTATCGCAACACGGACGCCTTAAGAACCCATATGGTAGATACTGTGCGTCTGgtaaaagcccccaaaaaaccTGTGTCTAAAAGGGATTAGCATTAAATGCTTCCGCTTTACTACATTGTGTCTTA

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0008184 glycogen phosphorylase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG:

id description
K00688 PYG, glgP; glycogen phosphorylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226695 lncRNA upstream 228806 21204762 ~ 21206867 (+) True G167269
TU226697 lncRNA upstream 229344 21204762 ~ 21206329 (+) False G167269
TU226663 lncRNA upstream 254921 21179941 ~ 21180752 (+) False layna
TU226600 lncRNA upstream 381660 21052635 ~ 21054013 (+) True G167199
TU226594 lncRNA upstream 402273 21033196 ~ 21033400 (+) True G167196
TU226838 lncRNA downstream 3095 21450087 ~ 21450349 (+) True G167374
TU226839 lncRNA downstream 8495 21455487 ~ 21456441 (+) True G167375
TU226840 lncRNA downstream 11129 21458121 ~ 21458864 (+) True G167376
TU226854 lncRNA downstream 29211 21476203 ~ 21493269 (+) True G167384
TU226937 lncRNA downstream 266951 21713943 ~ 21715393 (+) False dnajc18
XM_039777199.1 mRNA upstream 169143 21260820 ~ 21266530 (+) True zgc:165604
XM_039778051.1 mRNA upstream 178773 21248857 ~ 21256900 (+) True dlat
XM_039778460.1 mRNA upstream 187440 21234772 ~ 21248233 (+) True LOC120544596
XM_039778111.1 mRNA downstream 18251 21465243 ~ 21470028 (+) False slc22a6l
XM_039778113.1 mRNA downstream 18251 21465243 ~ 21470028 (+) False slc22a6l
XM_039778112.1 mRNA downstream 18251 21465243 ~ 21469422 (+) False slc22a6l
XM_039778109.1 mRNA downstream 18252 21465244 ~ 21470028 (+) True slc22a6l
XM_039778110.1 mRNA downstream 18252 21465244 ~ 21470028 (+) False slc22a6l
TU226694 other upstream 231607 21202665 ~ 21204066 (+) False mia
XR_005636400.1 other upstream 238636 21192054 ~ 21197037 (+) False si:dkey-71l1.1
XR_005636580.1 other upstream 445178 20990424 ~ 20990495 (+) True LOC120544780
TU226554 other upstream 466858 20966895 ~ 20968815 (+) False dynll2b
TU226458 other upstream 613127 20820834 ~ 20822546 (+) False nle1
TU226872 other downstream 152091 21599083 ~ 21608747 (+) True LOC120544432
TU226936 other downstream 233201 21680193 ~ 21698381 (+) False LOC120544614
TU226938 other downstream 268707 21715699 ~ 21720865 (+) True dnajc18
TU226958 other downstream 318405 21765397 ~ 21770198 (+) False LOC120544341
TU227214 other downstream 694553 22141545 ~ 22144199 (+) False kif20a

Expression Profile