RNA id: TU243017


Basic Information

Item Value
RNA id TU243017
length 1949
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G179464
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 31656916 ~ 31659171 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCGTTATGATAGTTCCTATTATTGCACACAGAGCTGACAAATGACATTGAAACCAGGATGatggacatttttctttttacaggaACTTAAACAGAGAAAGAAACGATGATTACATAAAAACAAGAACTTGTGCCACAGATACAGTGAACCCCATGGAGTAGACGaccatttaaaaaatgcataaacacactgacaaacaatatgtaaaaaaggaaaatgtatgAAGAACATGAAAAGGAGAAAGTAAAATGCACAAGTATCTCgtaaaaaaaatcttgttttgtatgcacatttttcacattCCTTTATTCGTTGGATTAAAAACACAGATTCCAGATCTGTAGCAAAAAGCAACATCTATAGTACCTTTAGCTCATTACCTGACTCAATGTTGcagaaaatgtttaaaacaatcCAGAGTGTTTTGGTGATTAATTCGTTGGGTGGAATTTGAGTCACAGCACAACAAACAGCATCTCTACAAATGCATCATACTCTCATGAACAGGTTCGTATCATATTGCACGAAAACGTAAGCACACAAATTCGTAttatatcctacgaaattaggtgACCGCCGGCTGATCACGTTGGGCCAGCTAAAGCAACAGTTGCTAGTTGAGTTTAGGGGGAaaaaggtgactttgagccaacTACAGAGCACTGCGAGCTGCTGGTTGCGTCAGTTAAGTTACAGCAAAGTTTACCCGACAAAATGTGAGCGTGATGCGGCGACAAGTGATGATtgttcaacgcattctcatgaacggttCGTATGATTTCGTACGAAAACTTATGCACAGCAATTCGtacgatatcctacgaaattaggcgaCTGCCGGCCAGTCACGAGACAGTaaagtttagcggtctttacagcTAAATTTAGCCGAAAAAAGGCGACTGTAAGCCGGGTATAGAGCACCGTGAAGTGACGGTCGTTTCAGCGGACATTACGGTTAAGTTTAGCCaacaaaaagtgagcgtcaatcggcgacgacagttaagtttaggcaccaaaacgactagttaagattagtaaaaaagatcgtggtttggattaaaacacttccGAGGAACGAACAACCGTTtgctgggtgaaagtcttgtgtctGACAGTAATAATTGTGTGGAATACATACCAATTACAGTGCTTTTCATGCCTATATATACGAATGGTtgcatgagaacagcctgacaAATGCTTCTGTACGTGCAGCGTGTACTACGTGATCAGATCTGTAAACAGCATCATCGCTTCAGTTCCAATGACCTTTATTAAACATCACAGTCCATTCATAGTTTTAAAGTATACAATAAGTTAAATTCATATGGCTTCATGTAGTATCTATATTATATATCCTATGATTaatagcacacacacattcataataACCCAACCCTGTCTCCTACAAAATGACGCTCCCATACAACGAAACTGCGTTCTCAATTACGTTTTGAAGGAAACATATTTTCCAGCACCTGGCGCACGGAAACGGTCACTGTTTTAAACACGGGTTAACATGGCGAAATGACAccaaactacttggttaggtttagaaaaagatgatggtttgggttaaaacaacAAAGTTTGTTACTTAATTGACCTCACGTTCGTAAGTTACGCTAAACGGATGCATTTCCGACTTTAAAAATGTTGGTGAAATGTTGGCTCCTAGGACTGTTGCTCAAACTACAGATTGTACTTCCGCATATGGACACAAAGAGTTTAAAAGCGGATCGAGAGAGATACTCAGACCGAACCTAGATTAAagaggcgctatgcagttttggccatttcttcacTGTCTgcgctttttgctcgcaggtttctctatagatcCTCCCCTACCGGTTTCTCTATAGAtcctcccctacaggtttctctatagagcccccccacaggtttctctatagagctccccctacaggtttctctatagagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242992 lncRNA upstream 3333 31565245 ~ 31653583 (+) True LOC120545154
TU243002 lncRNA upstream 85807 31568782 ~ 31571109 (+) True G179458
TU242970 lncRNA upstream 134538 31521881 ~ 31522378 (+) True G179441
TU242979 lncRNA upstream 147911 31486666 ~ 31509005 (+) True G179445
TU242965 lncRNA upstream 161496 31464014 ~ 31495420 (+) True LOC120545160
TU243006 lncRNA downstream 24417 31683588 ~ 31757783 (+) False G179458
TU243009 lncRNA downstream 24417 31683588 ~ 31684401 (+) False G179458
TU243028 lncRNA downstream 58754 31717925 ~ 31720315 (+) True G179475
TU243034 lncRNA downstream 87214 31746385 ~ 31747389 (+) True G179480
TU243035 lncRNA downstream 88014 31747185 ~ 31747463 (+) False G179480
XM_039779231.1 mRNA upstream 11256 31601825 ~ 31645660 (+) False LOC120545154
XM_039779232.1 mRNA upstream 11256 31626242 ~ 31645660 (+) False LOC120545154
XM_039779066.1 mRNA upstream 198310 31428167 ~ 31458606 (+) True LOC120545075
XM_039779213.1 mRNA upstream 253949 31303145 ~ 31402967 (+) True mctp1b
XM_039779214.1 mRNA upstream 253949 31303145 ~ 31402967 (+) False mctp1b
XM_039780871.1 mRNA downstream 139060 31798231 ~ 31800033 (+) True LOC120546097
XM_039778811.1 mRNA downstream 171152 31830323 ~ 31832260 (+) True LOC120544927
XM_039778889.1 mRNA downstream 182954 31842125 ~ 31844197 (+) True LOC120544976
XM_039779068.1 mRNA downstream 196809 31855980 ~ 31858839 (+) True LOC120545076
XM_039780221.1 mRNA downstream 206232 31865403 ~ 31867512 (+) True LOC120545679
TU242927 other upstream 176822 31387747 ~ 31480094 (+) True G179407
XR_005636691.1 other upstream 1346022 30264383 ~ 30310894 (+) True zmiz2
TU242148 other upstream 1634699 30021319 ~ 30022217 (+) True G178881
TU242149 other upstream 1634699 30021319 ~ 30022217 (+) False G178881
TU242091 other upstream 1861602 29794144 ~ 29795314 (+) False LOC120545429
TU243294 other downstream 420006 32079177 ~ 32099542 (+) True G179655
TU243292 other downstream 430257 32089428 ~ 32092131 (+) False G179655
TU243298 other downstream 430257 32089428 ~ 32099542 (+) False G179655
TU243411 other downstream 782884 32442055 ~ 32448815 (+) True LOC120545732
TU243616 other downstream 1305790 32964961 ~ 32984052 (+) True LOC120545086

Expression Profile