RNA id: TCONS_00071066


Basic Information

Item Value
RNA id TCONS_00071066
length 2358
RNA type mRNA
GC content 0.42
exon number 7
gene id XLOC_036357
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 18601252 ~ 18613948 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGACTTCGTTAGCTTTGTGCACAATTAACAGCTCAACGAGATCAATAGCAAGACTGTGCCGAGTGTCCCACTCTGCGCATGGCACAGCTGATGTACACTCTTTCGTAGCCCGTTACTCAACCCTGCGTAATTGTAGTGCTTCTCTTCCGAGAGGAAAATGCTCATTCATAAAAACGGTAACCAGGCAGATGTGCCAGTCGTCGCCGAGGAGGATCTCTCTCGGACGGTACGGTAAAGGCGTGTTTCTGGCTGCAGGAGCCGCGGCTGTCACCGGTGTTCTGGCGGCTGGTGTAAGTCACTTCCAGCGGGCAGAAATGGCAACGAAGATCTCCAGAGTTGAGGAGGAGGACGGAGACATTCGGGAGAGGTGCAAGTCGTTCATGTCTCCACCAGTCACTGACATCAAGCTCCTAGAGCAGAGGAAAGACGAGATGTCGACAAGGATGGAGATGCTCATCATGGAGACACAGTCGGCTTTCTGCAGAGCCCTGGAGCAGGTGGATGGAGGCTCATTCAGGGTGGATAGGTGGAGCAGAAAGGAAGGTGGTGGCGGCATCAGCTGTGTGATGCAGGATGGCAAGATCTTTGAAAAAGCAGGTGTGAATGTGTCTGTGGTGTATGGGAATCTTACTGAGGAGGCCGCCAGGCAGATGCGCAGCCGTGGAAAAATCCTGAAAGGAAAAGATGGAAAGCTGCCATTTCGTGCAATGGGTGTGAGTTCTGTCATACACCCCAAAAACCCCCACATTCCCACAGTGCACTTCAACTACAGATACTTTGAGATTGAAGAAGCAGATGGCACAAAGCAGTGGTGGTTTGGTGGAGGAACGGATCTCACTCCTGTTTACATTGATTTGGAAGATGCCACCCATTTCCACAAGACTCTGAAGGAAGCCTGTGACAAGCATCATCCTAAATATTACCCAGACTTCAAGAAGTGGTGTGACAACTACTTCTACATCCGCCACCGGGGGGAAACGAGAGGCATTGGTGGGATCTTTTTCGATGATTTGGATTCCCCTGATCAGGACGAGGTTTTTAATTTTGTGAGGAGCTGCGCTAAAACTGTGGTGCCTTGTTACCTGCCTATTGTTTACAAGCATCTGAATGACTCCTTTACCCCTGAGGAGAAGGACTGGCAGCAGGTCAGGAGAGGCAGATATGTGGAGTTTAATTTGGTGTATGACAGAGGGGTGAAATTTGGTCTGGCCACACCGGGGTCCCGCATCGAGAGCATCCTGATGTCTCTGCCACTTACTGCAAGGTGGGAGTACATGCACGAGCCCACGAAAGGCACTAAAGAAGCCGAAATGCTGGAGATCCTGCGCAACCCTAAACAATGGATCTGACCGAAGGGGAAAACTCACTCATCCATGGGGAATGCGAAAATGGAGGCTGCATCCTCGCTGTAATTCCAAATATGTCCGAAGCTTTTAGATATTAATAAGGAacacatttactaacacagaaaACGAACAGATTCGCTGTGCATTTCTGACCGTCCTCAGCTGTAATCAGctccctctctctgtctgtgGCAGTCATTATGGATCGACTGGAGATTCAGTGTTTCCTCCTGTGACAGAGTTTCTTGGTTACAGCTTGGTTTCTGCTTGCACTGCTTTAATCATGACTGCTGCTGTATACTAAACCTGTAATGAGCCTGCTGGGCTGTTTTTGAATGGACATGTCAGTCACGTATGCCTAAATGGTCATGTTTAATGAGTGCTGAGTCAAGCACAGTGCTGTTGTTATTGGGTTTCTAATACTCTTCATTTTCTTTGTGtctttgtgtttgtttctttttacatattttaaaacgaGGATCAGATTTTGAAGTATTCTCAGGACTTCATAATGAGATTTTTGtgtaatacaaattaataaactGTTTTATACGTTGTATAATCTTTATATTTTATGTGTCATTTACactgaaaatataaaatacactGAAACATTTCCAGTGCATTTTCCATTAAATATACACAAGTGTCCTTCAACACTGGTGAACTGATCAGATGTGTTTCTTTTAAACACTCTGAGGTATTATTTACTGATttcgtgtgtatgtatgtatgtgtgtatgtgtatatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtatgtatatgtgtatgtgtatatatatatatatgtgtgtatatatgtatatgtgtatatatatatatatatatatatgtatatatatgtatatatatgtatatgtatatatatatatgtatatatatatatatatatatatatgtatatgtatatgtgtgtagatatatatatatata

Function

GO:

id name namespace
GO:0042541 hemoglobin biosynthetic process biological_process
GO:0006779 porphyrin-containing compound biosynthetic process biological_process
GO:0006782 protoporphyrinogen IX biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005758 mitochondrial intermembrane space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0004109 coproporphyrinogen oxidase activity molecular_function

KEGG:

id description
ko00860 Porphyrin and chlorophyll metabolism

ZFIN:

id description
ZDB-GENE-030131-9884 Predicted to enable coproporphyrinogen oxidase activity. Acts upstream of or within hemoglobin biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrial intermembrane space. Is expressed in hematopoietic system; mesoderm; presumptive blood; and ventral mesenchyme. Human ortholog(s) of this gene implicated in hereditary coproporphyria and liver disease. Orthologous to human CPOX (coproporphyrinogen oxidase).

Ensembl:

ensembl_id ENSDART00000089172

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072437 lncRNA downstream 1896 18594067 ~ 18599356 (-) True XLOC_036356
TCONS_00071061 lncRNA downstream 68835 18524042 ~ 18532417 (-) False XLOC_036353
TCONS_00071059 lncRNA downstream 77130 18523060 ~ 18524122 (-) False XLOC_036353
TCONS_00071043 lncRNA downstream 361803 18230965 ~ 18239449 (-) False XLOC_036348
TCONS_00071040 lncRNA downstream 372423 18225039 ~ 18228829 (-) True XLOC_036347
TCONS_00072023 lncRNA upstream 157659 18771607 ~ 18773009 (-) False XLOC_036359
TCONS_00072022 lncRNA upstream 157659 18771607 ~ 18773009 (-) True XLOC_036359
TCONS_00071073 lncRNA upstream 600259 19214207 ~ 19216638 (-) False XLOC_036363
TCONS_00072024 lncRNA upstream 859884 19473832 ~ 19477990 (-) True XLOC_036370
TCONS_00072025 lncRNA upstream 1371894 19985842 ~ 19989009 (-) False XLOC_036374
TCONS_00071064 mRNA downstream 18330 18565904 ~ 18582922 (-) True XLOC_036354
TCONS_00071062 mRNA downstream 63370 18526930 ~ 18537882 (-) False XLOC_036353
TCONS_00071063 mRNA downstream 63376 18532315 ~ 18537876 (-) True XLOC_036353
TCONS_00071057 mRNA downstream 63386 18517575 ~ 18537866 (-) False XLOC_036353
TCONS_00071058 mRNA downstream 65430 18518176 ~ 18535822 (-) False XLOC_036353
TCONS_00071067 mRNA upstream 36466 18650414 ~ 18667693 (-) True XLOC_036358
TCONS_00071068 mRNA upstream 228330 18842278 ~ 18879905 (-) False XLOC_036360
TCONS_00071069 mRNA upstream 228695 18842643 ~ 18880399 (-) True XLOC_036360
TCONS_00071070 mRNA upstream 271160 18885108 ~ 18899427 (-) True XLOC_036361
TCONS_00071071 mRNA upstream 322655 18936603 ~ 19051906 (-) True XLOC_036362
TCONS_00071065 other downstream 16445 18584693 ~ 18584807 (-) True XLOC_036355
TCONS_00071060 other downstream 63386 18523081 ~ 18537866 (-) False XLOC_036353
TCONS_00071054 other downstream 82131 18515040 ~ 18519121 (-) False XLOC_036353
TCONS_00071006 other downstream 1348898 17252239 ~ 17252354 (-) True XLOC_036332
TCONS_00070990 other downstream 1935606 16639131 ~ 16665646 (-) False XLOC_036324
TCONS_00071074 other upstream 600777 19214725 ~ 19215684 (-) False XLOC_036363
TCONS_00071076 other upstream 600881 19214829 ~ 19216657 (-) True XLOC_036363
TCONS_00071084 other upstream 682214 19296162 ~ 19313415 (-) False XLOC_036367
TCONS_00071104 other upstream 1800898 20414846 ~ 20414961 (-) True XLOC_036381
TCONS_00071106 other upstream 2218636 20832584 ~ 20838022 (-) False XLOC_036383

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000010_03532494_03537374.mRNA True 1983 mRNA 0.45 7 CI01000010 3532494 ~ 3538010 (+)