RNA id: TU272652


Basic Information

Item Value
RNA id TU272652
length 4757
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G201242
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 9562678 ~ 9612629 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtaaaaatgaatacaaaagcGGTTTTCTTAACATTTCATATATGAATCACTCGTGACTTTGAGGTCAAATGAGTCTTtagttggattttttttttttgtcaggaatgacttttttttttttttttttttttacaatctaGTTTTGCTGAATTAAGGCCTCTTGATTTTGGCATCAGAACAATCTGTCAGTCAAATGTTTGTATCTGAAGTTGAATTAGTGTAGAGTTATGAACTCTCCTGGTTTCACAGTTCAGtcagaaaaacataaaataaacccTTACAAATAAATACCAAAATGGCTCAACATGCAGATGTAATCCATTTGTCCTAAAATGCAGACACAACTAAGCACATTTCTAATGGTCAGTGTTTGACACTGCAGGCATAATGCAACAATAACAATGGCACATGAGGCTGCTTCATTCAAGGGGACTCCGTCACAATTAATTTTCCTTCTTGAGCGTCTTTTAAAGAGGAGAAATATGGGCAAACGGTGGGAAATACTTGatgaaaaatggaaaaacattTGGTGgaattccccttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttaaaaaaaaaagtttaagtgACAAGGAGTGCAATCCTGTGTTGTGAAAGCCACTCTGACATCTTTACTGCATTACAGTGAAACCTCTGAGGGTGGAAACACACCTGAAGGTTTCATCTTCTGGGATTTTGGGACAAATTTTGTTAAAGGAAAGGACAATTTTAGCTAATTTGCTATGCCGATAGTCAGGCAAGAGATTGATAACTCTTTTAGGTTTGTCCATTTAACGTGAAGCGTAAGTAAAGTTACCGCCAgttgttagcttagcataacgaTGGGAAACGGCTAGCCTCACTCATTCGAAAGTTAACAAAATCCACCCAccagctcactaattaacacgttaCACCACTttttgtttaatccgtacaaaaacTACGTTGGGGGGACTATTTTCTGAAGTCCTGTCGTCACCGTGCGGTTGCAATCATTACAATTGCTAACGATACGTacgttaaacatacagtattgaTTTAGCCTCTTTAAGGAAGTCACTTTTTCCGGCTAAGAAATAATTGGGAACATAATTCCCTGTAATTAGGGTTAGAGGTGCTGTGAGGCAGATTGTGTTAcctttagacagagccaggctagccgtttgcccctgtttccagtcattatgctaagctaactagcggatTACTTTGTATTTGCATACGGACATGAGAGTGGTGCCATACTTTACACGTCACACCCAAAATATCAAACTAGTCCTTTATGAGTCTTCTAGTGTGTGTCCACCCAAACTACTGCAGAGGATTTCATCACTAAATTACTGCATATTATAACTCCTTTTGTTCATTCCAACAAAAGACAattttacatataaaaaaaatgacaattcaAAGAAATGAGAAGGCCTGTTTGATTTAACCCCAAATCTCTGAAGTTCTTTCTTTTTGAAGGGATGGTTTACGTTCACATTTCAGAACACCAGATGTTACATTATTTAAACATCACATTAATTATCTTTTTCTTTGCAGATTCCATTTCCTTAAAAAAGGTACACTGATTTAACAATAAGGCATATTCTAAACACTTCCAATTTCGCAAGTCAAACCTTGACCCCTAACGGTATCTTCAGAAGCTAAATTTTGAAGCACATTTTCAATTTATCGCACAAAAAATGAAAGACATTTTGCAGCTTTAGAATGTTGACCTTAAAGGTAAAATCCATCTACAAATAATATTTTGCACAGGTTTcatgggggggggaggagagtCGTACAACCACTAGAAATGACAACTCTCTCGCGGATTTTCATATAAACAGTTCATCTTCACACAGACCAATAAGATTGTCACATTAACATAAGAtgctgcaaaaaataaataaaaaatcatattGCTCTACAATGGCTGCGTGAAAACAAATCTTCGGCTCAGTAACGCGGGCTTCaaaccaataaataaataaataaataaagacaagtTTAAATGAAAGTGTGAAGCGGATGATTcctctagttttttttttttttggtcaaagGCTGTTTGATGATGCAGACAGGCTGTACAGTGTCTGTCGTGGAAAACAACTGCAGTTTTGGCGTTCTTCCCTTTCTCAAACTGGACATTTGCGTGATCGTGTATGCCGTTTTGGTGACCCTCAAACGCGCTCTAAACTACACGGGCTTCGATGACAGAAACAAGCATCCCTCACATCCTGAAAAACTATCTTCCCGGCGATAAGCGAGCCGGGCAAAgatctccctcctcctcctcctcctcctcctcactgcACCACCACTGCTCCTAACAACCCTAACTCATTATTGCTCGCATGTTGATACGTAAAGTAAGGGAAACCATTCTCGTCTGACAACAAGGCTCCAAACTTAAAACTAAAACGCGACTCTTTCTTTCGGCTTTGAGGAGGACAGCCTCCAGTTTGGGAGAAGAAACGACgtggacgtttttttttttttttttATGTGGTAGTCTACATTTTACATCCAGAGGGGAATGAATGTAAAGcttagtaatttgaatgttaacCTACGTAAATCCTGTGGCTTAGGGCTCCCTTTAAAGCCATGGCTAGACTTAATGACCAGGAATCAAaactggaggtctctcagaatTGTGGATGTGGAAAATGTGGAATCTGgttgaaaaagagagagggggggttcAAAAGTGGGAAAAGATTGTGCATAAGGTATTGTGCTCATTAGGTTTCTATTATTAAAACAACAGCATGCCTGGAAGTCAGGCTGCACTGCCCCGGTAAAGATTTATTTAATGATATTTCTTTAGTTGTTCAGTGCCCAGGACAAGTGGGTGGTCACCTATTTTTGGTGTTTGTACAGTCGAAGTTATAAAAATCCCTTCTTGCCCTCAACCTTGTGAGACTTTGAGGTGCCTCCCTCCACTCTTGGTCGCAGGACATAATGTTCATGTAGCCTACTCCAATAAAGTTTAAATCCTGCAAATCCTCAGCAGATTTCTGAAACTGACAATCACTCTTGTTGAAGGCTTTTTGCATCTTGCATCCTGAACACTATAAAGAGGTTTTGTAGTTTATTAAACCGGCATCCTTTATTAAATGTGCTTATTGAATCTGAATCCTCTTGAAtgtctttttaaatatataggctatggatttaacttttttaaccaaacattataaacaacTTATTtaagaactaaaaaaaaaaagagaaaccttAACTTCAAGTAATAGTTTAACATATTATTTTCTTCCTTGTCGAGAGTTAGATAAAAAGAGTGACACCATTCTCATGTATGTACACTAAATCTGAAGTTGGCCTAATGGAGACCATGGATGATGTAGACAGGTAAATGGCTAGCCGTCGGTTAGCTTACTTTACCCTAACAGAAACGGGTAAACAGCTAGCAGTCAGCTTACTTTAGCCTAATTGAGACAGGTAAACAGCTAGCAGTCGGTTAGCTTACTTTAGCCTTACCAAAAATAAGTTAACAGCTTATAAGTTAGTTGCCTTTCTTTAACCTAGCTACGGAAACAGGTAAATGGCTAGCAGTAAGCTAACTTAATGGAGACAGGTAAATAGATAGCATTTCGCCAATTAttatgtctttctttttttttttaaagtgtaagATGACATGGATagcatttagcatttagctaagATATAGAGGGCAGTACAAAAGAGATCAGTACAGCAAAAAGTACAATGCACACAGCATTAACAATGACTCTCCAACAGCAAACTACAACATAATAGTAATAGTAGTGGTGGTATTAAgtattacattaataaaaaaaatatataaataaaggaggAGCATGGGCTGAATGAGTCATAGCTAGGTATTGGGTTAGAGTTTTGCGGTAAGAAGATGATCGGTCCTTTCCCAGGTTCAAAACTAAATTGAAATCCCCACCTATAACGAGCTCATTTGAGGAGCATTCAAGCATGAGAATCACATTTTGGAAGAATTGAGGGCAATCATAATTGGGGCCATAGGCATTAATCAATGTAATAGCCTTTAAGTATCAAGTATCTGccttctttgtctttctcaACGTTAAAAATGTACCTTTGCAGGTAGCAAAGGTACATTTTTACCAATCAGAGTGGCAACTCCCCTTGATTGATATGTATAGGATGCATAAAACGCCTGTCTTTGCCATTGTCGGGTTAGTTTAGCATGTTCACGATCGGTCAAATGTGTCTCCTGCAATAGAGCTATAtctattttatgatttttcagGAAGTTAAGTACCTTTTTACGTTTTgataatacattgatgccattaGTGTTCCATGTCAAATACCTAAGAGCTGCATTTGTCATTTCCCCTATCTGCCTATCCAGTAAGGCCATGTTACAATAAACCAGTTAACCCTGGCAACCTCTaaataagttattattttttttatattgaagGCCAATGTAAAAGTGGAGAGTTAGACAAGCCATGCCAGAGCATAGTAATGACAAAATGACTTATTTTCTATTTAGCCTATATAAATTACTATCGTAACCTTGACGCTTTTGACAATGCTCTTtgataacagaaaaaaagagacttgGAACCAAATTCAAGATGGCCTAAATGGatttataaactgtatttatatttccaTTAAAGTGTGAATATTTGTGTAGAAAAATATTGTGTGTTCAAGGTAAGTGTGGCTGGAAGAGAG

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272641 lncRNA upstream 63895 9498496 ~ 9498783 (+) True G201239
TU272566 lncRNA upstream 218685 9336645 ~ 9343993 (+) True G201173
TU272568 lncRNA upstream 231845 9329485 ~ 9330833 (+) True G201175
TU272520 lncRNA upstream 288701 9268917 ~ 9273977 (+) True G201134
TU272414 lncRNA upstream 343023 9218738 ~ 9219655 (+) True G201056
TU272741 lncRNA downstream 219008 9831637 ~ 9856727 (+) True G201309
TU272747 lncRNA downstream 293868 9906497 ~ 9906866 (+) True G201314
TU272867 lncRNA downstream 430797 10043426 ~ 10043913 (+) False LOC120549492
TU272870 lncRNA downstream 437911 10050540 ~ 10050743 (+) False LOC120548905
XR_005637437.1 lncRNA downstream 468096 10080725 ~ 10082943 (+) True LOC120549808
XM_039786007.1 mRNA upstream 110 9553606 ~ 9562568 (+) True exd2
XM_039786008.1 mRNA upstream 110 9553606 ~ 9562568 (+) False exd2
XM_039785881.1 mRNA upstream 9828 9501661 ~ 9552850 (+) True numb
XM_039785885.1 mRNA upstream 9828 9501661 ~ 9552850 (+) False numb
XM_039785887.1 mRNA upstream 9828 9501661 ~ 9552850 (+) False numb
XM_039786364.1 mRNA downstream 2931 9615560 ~ 9653399 (+) True paplna
XM_039786365.1 mRNA downstream 2931 9615560 ~ 9653399 (+) False paplna
XM_039786366.1 mRNA downstream 2931 9615560 ~ 9653399 (+) False paplna
XM_039786916.1 mRNA downstream 323107 9935736 ~ 10004742 (+) False smoc1
XM_039786918.1 mRNA downstream 323107 9935736 ~ 10004742 (+) False smoc1
TU272417 other upstream 341376 9220641 ~ 9221302 (+) True G201057
XR_005637554.1 other upstream 2662334 6900139 ~ 6900344 (+) True LOC120550068
XR_005637532.1 other upstream 2668256 6894216 ~ 6894422 (+) True LOC120550044
XR_005637539.1 other upstream 2673761 6888711 ~ 6888917 (+) True LOC120550052
XR_005637535.1 other upstream 2675122 6887350 ~ 6887556 (+) True LOC120550047
TU272715 other downstream 96235 9708864 ~ 9817625 (+) True G201287
TU272771 other downstream 377943 9990572 ~ 10007687 (+) True smoc1
unassigned_transcript_1139 other downstream 417367 10029996 ~ 10034827 (+) True LOC120549541
unassigned_transcript_1140 other downstream 417931 10030560 ~ 10031384 (+) True LOC120549542
unassigned_transcript_1141 other downstream 427514 10040143 ~ 10040762 (+) True LOC120548903

Expression Profile