RNA id: XM_039785887.1


Basic Information

Item Value
RNA id XM_039785887.1
length 3394
RNA type mRNA
GC content 0.52
exon number 9
gene id numb
representative False

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 9501661 ~ 9552850 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGCGGCAGTGGCTGAAGCGATTGGACTGCGAGCGTCTCTCCCGACTCTTTCTGTGGAATTTGAATTATTTCGGCACTTGCACGGTTCGGGATACACAGGTGACGGCGTTCACGGTGCTTCTTCTGGGTCGCAGCGGTGATCACAGGGAGCTCAGCGATGAATAAGCTACGGCAGAGCTTCCGCCGGAAGAAAGACGTCTACGTGCCGGAGTCGAGTCGGCCGCACCAGTGGCAGACAGACGAGGAGGCGGTCCGCAGCGGCAAGTGTAGCTTCGCAGTCAAGTACCTGGGACATGTGGAGGTGGAGGAGTCTCGCGGCATGCACATCTGCGAGGATGCAGTGAAGCGGCTGAAGACGGACAGGAAATTCTTCAAGGGATTCTTTGCAAAAGCTGGGAAGAAGCCAGTGCGCGCTGTGTTGTGGGTGTCGGCAGATGGTCTTCGTGTCGTAGACGACAAAACAAAGGACCTGATTCTGGACCAGACAATAGAGAAGGTGTCGTTCTGCGCTCCGGACCGTAACTTTGAGAGGGCCTTCTCTTACATCTGCAGGGACGGCACCACGCGACGTTGGATCTGCCATTGTTTTATGGCCATTAAAGACTCAGGAGAGCGCCTCAGTCATGCCGTGGGTTGTGCATTCGCCGCCTGTCTGGAGCGAAAGCAGAAACGGGAGAAGGAGTGTGGGGTCACGGCGACCTTTGACGCCAACAGAACCACTTTCACCCGCGAGGGCTCATTTCGTGTTACTACGGCAACAGAGGCGGCAGAGCGGGAGGAAGTCATGAGGCAGCTACAGGATGCTAAAAAAGCAGAGACCGATGTGAAGGTAGCTGGGAACGGGGCCGCCAGTGTGACAAACTCCTCCGCACACCAGACGGGAGGCTCCCCATCCCCCTCGTCCTCCCCACCTCTCTCTATGTCCACCCTGGGACCCCAGGTGATACCACGCAGACATGCGCCGGCAGAGGCTCTGGCCAGGCAGGGCTCCTTCCGAGGCTTCCCGGCCCTCAGTCAGAAGACCTCTCCCTTCAAACGACAGATGTCCCTGCGCATGAACGAGCTGCCCTCCACCATGCAGCGCAAGTCCGACTTTCCCATGAAGAATACAGGAAGTAACTGGTCATCCCCTACTCCGGTGATAGTGGTCCCCCCCACATCCTCCCCATCCACGTCCTCCCACAAACGCACGCCATCGGAAGCAGACCGCTGGCTAGAAGAAGTCACCAAGTCTGTCCGAGTCCCGCAGCCTAACCCCATGGTGGCCGCAGCCCCGCCGCCCACCCAGCCGTTCGCCGCCCCTGTGGCGATGCCTGTGCCGTCGGTTCCCCCGGTGGCCTTCGTGTCCTCTCTGCCCTCGGCCGTGCCCATGTTGCCCCCTCGCCAGCCGGCCTTCCACGCTCAGGCCCCAGCTTCCTACCCGATGCCCAACGGGCTGCCGTTCCCTCAGCCCAGCGTGCCCGTGGTCGGCATCACTCCTTCGCAGATGGTGGCTAACGTGTTCGGCTCGGCCACACAACCGCAGCCGTTCCCCGTCTCGGCCTCCACGACCCCGCAGCACGATCCCCAGGCTGTCGGCAACCTCAGCCCGTTCATCAAACACCCGCAATTAAATGCAGTGAACCCTGCTCCCCTCCAGCCATCCAACGGTAGTGTGACCTTTAACGGGGCAGACAGTTGGGCTGCTCCGTCCCAACTCGCTCCATCCTCCCCAGCCACCCAGCCGCCCCCACAGCCGCAGGAAGATGCCTTTGAGGCCCAGTGGGCAGCCCTGGAGAGCCGCTCGCGCCAGCGCACCACAGCCTCCCCGACAAATCCTTTCTCCACTGAGCTGCACAAGACCTTTGAAATCCAGCTCTGAAGACTGTGTTTCAGATTGGAAAGCACTGGACAATAAGGACGCCATTTTAGCTGGGGAGTGCAGATGTATGATTGACTAAAGAAGAAAATGGGAACGTCCTCCTGCCTCTCTTCATCTCGGTTTCAGTGGACAAGCTCAGCAGGACCGAAAAGAACCAGGAGCCAGTGGAGAGCAACGGGTGAATCAACAGGGAGCAGAACTCTGCACAGCAGCGacgggaggggaaaaaaaacccaaaccGGTTGCTGTTTAACGAGGGCGCAGCTCCCCAGGCATTTCATTAGCAttgtctgtattgttttgtttgtgctgTGCAGCGCAAGGTCGTCATCACCCTGTGGAAAATCTGCACCGAGCCGCACCCAGCCCCCTGTCAGCCCCCACGCGCCCACCCAAGGTGTGGTGACTCCCGTCCCCGGCCCGCCTCGGCTCGGTCCTGCTCCCAGCGCTCCCCTGTTGACAGGACGAGACCTTAGCCTCCcctggcagaggagctgcagcactgAGAGAACTCAGCTTCCAGATGAGAAGTTCTTATTAATAACTTCCCAATCAGAAGAATGAAGTGAGACAAAATGccaaaatctttatttttatgcattaagtatattttaaatagCTTTGGAACCTAACAGAAGAGTTGTAAGTAATCGTGCCAAAGGCACAGGCTAGCTACAATGAGACAAAATGATGTTCATGTATACAAGAAATTATCGTATATATTatacatgaatatatatatatatctataaagaatctatactgtacacacagctTACAGCAGTGCTAATTTTTAATGTGATGTAAAGAGATTTTTTGAAGGGACAGCTGCTTtacttctgtgttttttttttgttttttttccattttatttttgaagaaAAATCTCTTTATTGCCGTCTGTTGCATCCTGTGATTGGATGTACAACATCTCACTGTAAATAGGGTGTCATTGCAGCAACAATCAACGTGGACCTAGCAATGGTGGCGGTGCCCAACTGGTTGCCTCTCTTACCTGTGCTCCgtttttaatagtttagtaCACATCAGTACTTAACATTTTACTTCTTCTGTCTTCATTGTCAttcttttgttgtgtgtgtgtgtggttatgaccttgtttttattttttatttaacatagtAGGGTGTGTCATCTATTGTTTCTCCACCtctaatattatttttttaagtagtagatttctaaattttttttattttgcacaagCACTAAAGTAGATGATTTGACCTCACAGGTTAGACCGTTGTGGTGCTGACCTGCCCTGACCTCCGTTAGCCTGCTGTGGTTCTGACGGTCAGCAGAATACTACTGGGAGATAAAAACGGTTTCATCTCTCACTGTCTGATTTCTCTcatgtcatgtttttatttttattttttaaatcaaacatGTGAATATGATCTATTATCTGATCTATTTTTCCATTTTGTAATTATTTCATTACTTTATTCCACTTCTCTGAAGAAATATTGAAGCTAAAAGATTGAATAAATTGATGGTGGTAAAGGAAAA

Function

GO:

id name namespace
GO:0060319 primitive erythrocyte differentiation biological_process
GO:0016323 basolateral plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272641 lncRNA upstream 2878 9498496 ~ 9498783 (+) True G201239
TU272566 lncRNA upstream 157668 9336645 ~ 9343993 (+) True G201173
TU272568 lncRNA upstream 170828 9329485 ~ 9330833 (+) True G201175
TU272520 lncRNA upstream 227684 9268917 ~ 9273977 (+) True G201134
TU272414 lncRNA upstream 282006 9218738 ~ 9219655 (+) True G201056
TU272652 lncRNA downstream 9828 9562678 ~ 9612629 (+) True G201242
TU272656 lncRNA downstream 34110 9586960 ~ 9590784 (+) True G201246
TU272657 lncRNA downstream 34110 9586960 ~ 9589499 (+) False G201246
TU272658 lncRNA downstream 38334 9591184 ~ 9597003 (+) False psen1
TU272741 lncRNA downstream 278787 9831637 ~ 9856727 (+) True G201309
XM_039786688.1 mRNA upstream 4123 9442548 ~ 9497538 (+) True galnt16
XM_039786689.1 mRNA upstream 4123 9443377 ~ 9497538 (+) False galnt16
XM_039786686.1 mRNA upstream 70614 9393774 ~ 9431047 (+) True vps39
XM_039786687.1 mRNA upstream 70614 9393774 ~ 9431047 (+) False vps39
XM_039786685.1 mRNA upstream 110195 9371102 ~ 9391466 (+) True LOC120549640
XM_039786007.1 mRNA downstream 756 9553606 ~ 9562568 (+) True exd2
XM_039786008.1 mRNA downstream 756 9553606 ~ 9562568 (+) False exd2
XM_039785407.1 mRNA downstream 38320 9591170 ~ 9604625 (+) True psen1
XM_039786364.1 mRNA downstream 62710 9615560 ~ 9653399 (+) True paplna
XM_039786365.1 mRNA downstream 62710 9615560 ~ 9653399 (+) False paplna
TU272417 other upstream 280359 9220641 ~ 9221302 (+) True G201057
XR_005637554.1 other upstream 2601317 6900139 ~ 6900344 (+) True LOC120550068
XR_005637532.1 other upstream 2607239 6894216 ~ 6894422 (+) True LOC120550044
XR_005637539.1 other upstream 2612744 6888711 ~ 6888917 (+) True LOC120550052
XR_005637535.1 other upstream 2614105 6887350 ~ 6887556 (+) True LOC120550047
TU272715 other downstream 156014 9708864 ~ 9817625 (+) True G201287
TU272771 other downstream 437722 9990572 ~ 10007687 (+) True smoc1
unassigned_transcript_1139 other downstream 477146 10029996 ~ 10034827 (+) True LOC120549541
unassigned_transcript_1140 other downstream 477710 10030560 ~ 10031384 (+) True LOC120549542
unassigned_transcript_1141 other downstream 487293 10040143 ~ 10040762 (+) True LOC120548903

Expression Profile