RNA id: XM_039785192.1


Basic Information

Item Value
RNA id XM_039785192.1
length 4556
RNA type mRNA
GC content 0.46
exon number 15
gene id LOC120548749
representative False

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 10934262 ~ 10944673 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCATACTGAACCTGACTTCCTCAGTAAATCACAGAGCTGAGCTCATGCGGGACATCTGCTGTCCGCGCAGAGCAGCACGCAGCTCAAACACGAGACACCCGCCTTCAAACACCGCAAATGACTGAAAACAAGTTTGTCCACAGAAGAGGAAACCCTGGAAATGTTAAGTCTTTTTGGATTCGCTGGATCTTTTCAGATGTCTGCAGAAGCAATATTGAAGAGCTTTAACTGAGACTTATAAGGAGGGATCTTGGCTCCTGCAGCCATTTCCCCTGCAGGGCTGAGCTCTTTGGCTGGCTTGCCAGTTCCTTAGCAGAGGGGCTGCTGGCAGGGGCAACATCTGAGCAGgTCATGAAGCCTCAAGAGGCAGAGCTTGTCACTGAAATCTCCAAGTTGCAATGCATGGTCTCAGAGCTGAAGACAGGGTTCGCCAGCGCTCTGCTGGAGCTCGGTCAGATCCAACATGGAGACACGTACCTGAGGGAGGAGCTGGTGGAGAACCGGAGGATCTGCCAGAAGAAAGCTCTTCGTTTGGAGGCTCTGGTCGAGTCACTGAGGGAAGAACTTGGAGTGATGCAGTGTCAGATCTTGCAGCTGTACAGTAACAGACAAAGACCTCTGCAGGATGGAAAGAGCTCTACAtccaaacacaaagaaagCAGTGACCCAGCAGAATCGGCCTGTGAACGGAGTCAGTGTGACTGTTGGTCTGCTCCAGCAGCCTGTCTGTCCAGAGGGAAACTGCTCCTCCATTGTTTCCTGCAGGGCCTCAAAGCAGGGCTCAACGAAGGCACAGATGCACGGCATCAGGTGGCGATGCAACTTCTGCATTCTGAGTGGGAGTACGTGTCAACCTTAAACCAGCTGTATGAAAAATACAAGACACCACCAGCTCACCAGATGACTGTGGAGCCATATCAGACATATCTGAAGTTTGTGGAGCAGCTGTTACAGCGACATCTGCTCTTCCGAAACACGCTGCAGGAGCGGTTATCTGCTGAGCACTGGAAATCTCTGGTTGGAGACATCCTGGTGCAGCTCATCGGACAAAATGACACAGCCTTTTCGGATATGTACCTTGGATACACGACCACCCTGGCGTCATTCCTCTCACTGGAGTTCAACAGATTAAATCATTCTGAGAAAATACAGAGCGgccagatggagagagaggaaatgaaacTGCTCTCCCAGCTGTTGGCACCTGTCTCTCGCATACACAGCTACCTGAGCCACATTCAGAACTTGTTGCAGTGGACGGGTAAAGAGCATCCTGATTGCAGCCTCCTGCTGGGAACTGAGCGAGCGCTGAGGAGCATTTTGTCCCGCTGTCATGTGATCCTGGAGGAAGACGTACGAtgggaggaaggagaaggagcTGGACAAAGCTGCTCTGATGCAGTGGCTGGTGGATCCTCTGCAAATTGTTGCACAAGGAACCAACAGACCAGAGAATCCCAGCGCGAGTCCAACACTGCAGCTCAGAGAGATGACCAGCAGGCTGTCAACCTCACTAACGGAGTCGACGGCTGTCACTCGATGCGTCTGGAGTGCTGGTCCTGCAGCCCAGTGAGGAGGAAGGGCTGTGGAAGCGACCGGACCCTCCTGAACCAGCCGGCCCGTGACTGTGGACACCCTTACTGCTCCCTCCTCACTCCTGACGCTGCAGCATGGGGAGAGAACAGCGACTCAGGCCAGGGCACCTACAGCCAGCCCAACGGGAAAGGCAGCAACGGGCTGGAGGCACCCCACACCAACCACAGCCTTGAGAACTGCGAGACAGACCCAGATGACACCTCAGCCTTCGACTACTCCTCCGTCACCTCCTGCAGCCCTGACGGCACCCTGCGCAGGGAGATGATGAGCAGTAACAGTggggaggatgaagaggaggacagCCAGGTGCCGGTGCTGTTGAAGCCCTCATacagccaacagcagcagcagtcaagGGAGCCACCCAGAGAGAGGACTGTGTGTTTGAGGTGGCAGATTCCCAGATTGACCCCTCACCCTCCTCTGAGAAGCACTGCAGGGCCGTGTGTGGACGGGCCGACGCCATGCCTCGTCAGCTCCTACGGGAAGAGGCTGGTCAATGTCAGGAAGGGGTCTCCTCCTTTACATCCAAAAAGTGCCTTCAGGCCCATCTGGGATGATCCATCCAAACagGCTGATGCAGCTCCAGAGAAAGACCACAGACAAGGCTTCGTGCCGATTCAAGCCCCTGCGAGGCAAAGTTTTCAAAATTTCAACCCGAGTAGAGAAAATCTGAGACCAGTCCTGTCTCAGCAGAGAGGTAACCATGCTGCAGCCATGAGCGGTGGAGGATTGTGGGAGGACAGTGAGGACAGTGAGGGACCCTGCAGTACCGTTTGACCCCCCCCCAGCCACCAGCCCCAGAGACTATCACTAAAAACTGTTGAACACAAAACTTTTAAGTTACTACCAAATTTGAGCCCAATTAGTGATTTCTTTGGTGGATATATTTTCCCCAAAGGCCATGACAGTAACGCATGAATGTCGAATTAGTGACCCttaaaaatgtttagtttttctgTTAAAGCTGAACCTTTGTAAACACGACATCATCTTTGTTTGGCTGTTTGGTTTTTCGGATAATTACTTTTTGACAATTGatagaaatatttaaaaaatatatatgtaaacGCAGGTTAGACGAAGCATTTCTAGCAGATTTAGCTACATTTCAAAAATTAAATATTCCAGACAATTTTGTATTTATCATTGAAGGTGAGATGGTTTTATATcaatgtgtagctagctagcttgctaaaaAAAGGAATGTTACTAAAGAATAACGTTAATACATATTTCACTTTAATTTAAGGACTAGCTAGATTTTAatatctagctagctaaaggAAGCAGTATAGGTAGGAACACTTTGGAAAATACGCTTATTTCGCTTTCTTGTGGAGAGTTAACGTTAACTAGCCAAAggtaacttagctagctagatgAGGTCTTCTGATAgcatggtaacgttagctagctagcgattTAAATATGAAGTTACGTTACAGCTAGCTAGCCGGTTAGcctatagctagctagcttagcacaaagccTGGAAAAAGCTAGCCTGGCCCTATTAAATAGTAACAAAATCAACCTACCAGCAGTTTTAAAACTCACTAATTAAACCACGGTATATCTCGTGTTTAATTTGTCCAAAAACAGAGGTGCAAAACGGCAATTGTAtccgctggttgcctggcaactaaCATTACTCAGagaaaagaaagttttttttttgttgatataGTATGGTAGGCctatcaatcttctcatgtaGCTACTCCCAAACAGCAAGCGAAAAAGCCTATTTCCCAAAAATATCAGACCTATATTTCCTCAATCTTGTCAACGTACCAACACCTTACTAACAGCTTATGCAGAAAGATAAATTAACTGTAGCAGAAAAAACGAGGAGAGAATTGAATAGTTCAGTACAAAATAAGACTGGGTGATTTATTAATCTCATCAAGACCATTAATACAAAGCAGTTAAAAGGCCACATACCATCAAATAAACCGACTGCTGGATCAAGCTGTTACAGTGCCACCGGAGGAAAACCAATCTGTTACTCTGTCTTGGCTggggtttaaaaacaaaaaacaaacaaacaaacatagaaaacaaaaagtcaaatttgGCAAAATTAACCCCACCACTACGGAAACTTGGAAAACTGGGGCCTTCTTTTTAAAGTCACTGGGTGGAGACAGTGAAGGGATTTGACTTCAGCGGTCATCCTCCAGATCTCCCAATTTTAGCTCTAGTTTGATCAGAAGTTTAATCATCCATCATCACGTGCACAGAACACAGCAAGAACAAGGGGCATGAGTGATATTTTGAAATTATGCTGAAATTCAGCTCATGGTGGTCAGACATCCTCAGGTGTTAGTGTCTTTTAAACACATCATGGGGATGAAAGGGACGTGGTCGACTTTTGTTTTTCTGCCCTGATCCATGTAGAAAGTGAGTTTCAACAGTTGCACAGGGCCACTGAATTTACAAACATGACCTATAACAACTGGGGCTCTTCAACAGTACAGCCTAAAGTGCACAAAGTGTGTTTCTCAGAAAGAATGTCCAATTCTTCACTATGCTCAAATACTTGCAACTGAATATAAGTTTGTGTATGTTCAACTGCAACTTTAATACAATTCCAACCTCTGTGTAATGAGTGTTAGCATTAAAAATCTTTGAAAAGGAGAATAGGCAATTAGTAGGATGTACAAAGTGAAGCACACGGCTAAGTAAGTGCTTGGCatattgaactgtatttttttttttcattgctttaAAACAGCTAAGGGgcagggaagaaaaaaatggcTTTCCTCAGTTAATACTCCCAGTGTTTCAACTGGAGATTGTCTGTAAGTAAGTTAGTGACAGTGACCTGTTTTTttctggttttgtttttgtttttttttgttgttttttatccGACTGTAGCAGCATTGGATTATTAGGCAATATTTGACTGAACAGATGCGGATGAGGGTACAATACAACGGGAAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU273219 lncRNA upstream 28342 10900677 ~ 10905920 (+) True G201654
TU273180 lncRNA upstream 134322 10783955 ~ 10799940 (+) True G201622
TU273176 lncRNA upstream 176772 10756500 ~ 10757490 (+) True G201619
TU273166 lncRNA upstream 223266 10702853 ~ 10710996 (+) True G201613
TU273163 lncRNA upstream 243951 10688006 ~ 10690311 (+) True G201610
TU273287 lncRNA downstream 184308 11128981 ~ 11134169 (+) True G201714
TU273293 lncRNA downstream 243357 11188030 ~ 11188350 (+) True G201720
TU273407 lncRNA downstream 346426 11291099 ~ 11312327 (+) False LOC120549737
XR_005637450.1 lncRNA downstream 380921 11325594 ~ 11366801 (+) True LOC120549871
XR_005637449.1 lncRNA downstream 380921 11325594 ~ 11366801 (+) False LOC120549871
XM_039786375.1 mRNA upstream 6454 10920268 ~ 10927808 (+) True cnih1
XM_039786376.1 mRNA upstream 6454 10920273 ~ 10927808 (+) False cnih1
XM_039786468.1 mRNA upstream 14548 10909911 ~ 10919714 (+) True gmfb
XM_039786506.1 mRNA upstream 477672 10451650 ~ 10456590 (+) True LOC120549517
XM_039786504.1 mRNA upstream 574417 10355927 ~ 10359845 (+) True oip5
XM_039785196.1 mRNA downstream 52124 10996797 ~ 11000545 (+) True dmac2l
XM_039785195.1 mRNA downstream 52126 10996799 ~ 11000545 (+) False dmac2l
XM_039785236.1 mRNA downstream 108018 11052691 ~ 11066039 (+) True atl1
XM_039785237.1 mRNA downstream 108035 11052708 ~ 11066039 (+) False atl1
XM_039786224.1 mRNA downstream 167249 11111922 ~ 11116985 (+) True LOC120549356
XR_005637396.1 other upstream 583549 10345019 ~ 10350713 (+) False ndufaf1
TU272884 other upstream 816656 10112020 ~ 10117606 (+) True G201399
unassigned_transcript_1147 other upstream 841672 10091682 ~ 10092590 (+) True LOC120549807
TU272875 other upstream 852260 10081350 ~ 10082002 (+) False LOC120549808
unassigned_transcript_1146 other upstream 853606 10079725 ~ 10080656 (+) True LOC120548906
XR_005637354.1 other downstream 520738 11465411 ~ 11485526 (+) False smc6
XR_005637295.1 other downstream 580069 11524742 ~ 11560413 (+) False si:ch73-242m19.1
TU273733 other downstream 952224 11896897 ~ 11897483 (+) False tulp4b
XR_005637440.1 other downstream 961168 11905841 ~ 11913857 (+) True slc18b1
TU273740 other downstream 961235 11905908 ~ 11909271 (+) False slc18b1

Expression Profile