RNA id: XM_039786504.1


Basic Information

Item Value
RNA id XM_039786504.1
length 1506
RNA type mRNA
GC content 0.41
exon number 5
gene id oip5
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 10355927 ~ 10359845 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTATTCGTCGGTTATGTTTAGCGCTTGAATATATTTAAGATGAGTGGGGTTAAATCATCATTTTTGGCATAAGCTTATTTAGTTTTCACTTAGTTTtaacatgttaaatgtttaaaacgAATGTTCTTTGGCAGTATATCGGCATTTGTCATATGACTCCAGATGGTGGCAGTGTTACACCGAGCATGCCGAGATGAAAAACACAAGGAAGAGACGTCCTGCTTTCTGGTCCTGAGTTCAAATTTACAAGCGGGACAAATAGCTAAAGCTATCTATCTAGGCTCTGTAGTCTGTACAACTCCAATAACATGGAATTTGACGAGAGCCTCTTAATCCAACGTACAAACGCTGCAAAGCTAGCTACAGGGGCAGAACACAAGCAGCGGATGACTCTCCACTGTCAGCAATGCAACACCGTCCTGGGGGACTCCCTCGGCGTCTGTGGGGAGATTACATGTATGGACGCTATCGTGTGTATTAGAGTAACCAATGATGTGGTCATCAGTGATGCAATGGAGTCAGGACATAAAGATGCAATGGCTAATTgCATCTACAGTTCTCTAATATGCCGCGGCTGCCGCTGTGCTGTGGGGAGAGTCGTTCACTCTGCCCCGTCGCGTTTGGCCACGGTTCGCTCCATGTTTCTCCTCTACAAAGCAAACATCAGTTGttaCATTCTTAACTGCTGCTCAATGGTGAAGGCATCCACACTTACATTTGATCTGAAGCCCCTCAGTGAAAGCATGAATAAGGTGAGGAAGCAGTTTGAAGCGCAGTTGGATCAGATGTCACGCATTAAGAGCAGACTGGCTGACAGAAGTCTGACCAGTGAATTTGTCTAGTAGCACGAACATGCAATCTCCACTGTACCTAGTCCTGGGATAACGGATATGCGTTCTCTCGTATACTCCTTTGTGTTGCAACTTCAGTGTTTccattcaacttttttttcttttgatgatGCAGGAATTGCTTTCAGCGTTATTCATTAGTTATGATTGATATCTGCAGATGCAGTGGATATCATTGTTCATTAATTCAATTTATTGAAAGTGGTTTTTTTACACCAATATATTTTGGACAGACATGAATTTTTCTTCAAATAAGACGTGAAGCTATTCGATGAAAAGAAACATTTGTGCAGTTTGGAGCTGTAACCATTTACATTGTGTACCTTTTTAGTTTTTGGGAACATGTCCTATCTACACCGGCAAGATCTCACACCAAAACGACTAACCTAAATGTATATGGCACCATTACCTTTAGTATCTTTATGGATACCCTGACACATAGTCAGAACCGCAAGGCCATGAAAACGGAACTAAACCATATGTGAAAAACTGTCTGATAATAAGCTAAAACACACAAGAACTACTGTATCCCTTGTAttttaggcctcctgcacactggctgcgtggcgtttctgttgcgtgtcaattatttttatttatatctgcatttgtcaaaacctagagactttcaaacatcaaaatgtcattcattaa

Function

GO: NA

KEGG:

id description
K11565 OIP5; opa-interacting protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272984 lncRNA upstream 4801 10345539 ~ 10351126 (+) False ndufaf1
TU272994 lncRNA upstream 60430 10273072 ~ 10295497 (+) True G201480
TU272894 lncRNA upstream 203168 10151901 ~ 10152759 (+) True G201409
TU272880 lncRNA upstream 261176 10094391 ~ 10094751 (+) True G201396
XR_005637437.1 lncRNA upstream 272984 10080725 ~ 10082943 (+) True LOC120549808
TU272988 lncRNA downstream 19036 10378881 ~ 10382515 (+) False G201478
TU272989 lncRNA downstream 19036 10378881 ~ 10385415 (+) False G201478
TU272991 lncRNA downstream 20286 10380131 ~ 10385415 (+) True G201478
TU273040 lncRNA downstream 25740 10385585 ~ 10388109 (+) True G201523
TU273099 lncRNA downstream 65320 10425165 ~ 10425815 (+) True G201558
XM_039786500.1 mRNA upstream 5214 10345019 ~ 10350713 (+) True ndufaf1
XM_039785096.1 mRNA upstream 114769 10235018 ~ 10241158 (+) True si:ch211-10a23.2
XM_039786874.1 mRNA upstream 162813 10182109 ~ 10193114 (+) False rdh12
XM_039786873.1 mRNA upstream 162813 10182123 ~ 10193114 (+) True rdh12
XM_039786872.1 mRNA upstream 179942 10167377 ~ 10175985 (+) True arg2
XM_039786506.1 mRNA downstream 91805 10451650 ~ 10456590 (+) True LOC120549517
XM_039786468.1 mRNA downstream 550066 10909911 ~ 10919714 (+) True gmfb
XM_039786375.1 mRNA downstream 560423 10920268 ~ 10927808 (+) True cnih1
XM_039786376.1 mRNA downstream 560428 10920273 ~ 10927808 (+) False cnih1
XM_039785192.1 mRNA downstream 574417 10934262 ~ 10944673 (+) False LOC120548749
XR_005637396.1 other upstream 5214 10345019 ~ 10350713 (+) False ndufaf1
TU272884 other upstream 238321 10112020 ~ 10117606 (+) True G201399
unassigned_transcript_1147 other upstream 263337 10091682 ~ 10092590 (+) True LOC120549807
TU272875 other upstream 273925 10081350 ~ 10082002 (+) False LOC120549808
unassigned_transcript_1146 other upstream 275271 10079725 ~ 10080656 (+) True LOC120548906
XR_005637354.1 other downstream 1105566 11465411 ~ 11485526 (+) False smc6
XR_005637295.1 other downstream 1164897 11524742 ~ 11560413 (+) False si:ch73-242m19.1
TU273733 other downstream 1537052 11896897 ~ 11897483 (+) False tulp4b
XR_005637440.1 other downstream 1545996 11905841 ~ 11913857 (+) True slc18b1
TU273740 other downstream 1546063 11905908 ~ 11909271 (+) False slc18b1

Expression Profile