RNA id: XM_039786506.1


Basic Information

Item Value
RNA id XM_039786506.1
length 2000
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC120549517
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 10451650 ~ 10456590 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTTCCTGCTGGAGGATCCCCGTGGGACCACTGGCCTTGCATCTATCGACCAATCGGCTCGTCGGAGAGGAAAAACACGAGAGCAGGCTCGAGCGGAGGAGCGCGCCTCGCGCAAGGGCTGCACGCACAGAGGAGACGTAGCTGCGACACTGCTGGCGAGGCGAAGACGCGTCTACGGCCGAGAGGATGCAGTGAAGGAGCCTCGATTCCCCCCAGCTAATTTACGCCGGTGCGCCACGGCAACTCTAAGAAAAATAACGACGAAAATGAGCGTGGTCAAGACCGGGCACGACGGCAGGGTCGACGGCGGCAGAGGCAGCCACACCGACACCGACGGCGGCTCCGGCTCCCCGAGGCTCCAGCAGTGCGCTCAGCCTCCCAACAACagcagcggcggcggcggcggcagcagcagcagcagccggacCAAAGATGCCAGATACCAGCAACAGCTCCAGCAGCAGAGGCATCACGGTGGGTCGATGCTGAAACAGCCGTCACTCAACGAGCCAGCCGACGTCGTGAGACGGGCTCTGGACTTCAAGTGCCAAGGGACCCAGTGCTACAAGGATAAGAAGTACCGAGAGGCGATTGGCAAGTATCACCGCGCTCTGCTGGAGATTAAGGGGCTGTGTAGGGTGCTGGGGGATCCGGACACCGGCTCCAAGCCCCCGTCCCCCCTCCTGCCAACCATCAGCAAGTCCAGCACGCTGACAGATGAGCAGAAGGGGGCCATGGAGAATGCAGAGCTGGAGTGTTACAACAGCTTGGCCGCCTGCCTGCTGCAAATGGAGCTGGTGAACTATGAACGGGTGAAGGAATACTGTCTGAAAGTGCTTCACAAGGAAGGGAAGAACTTCAAAGCTCTGTACCGATCCGGCGTGGCCTACTACCACCTAGGAGACTTCCAGAAGGCCCTGTACTACCTGAAGGAGTCACACAAACAGGAACCATCAGACACCAATGCCATCCGCTACATCCAGCTGACAGAGATGAAGATTCGCCGGAATGCCCaaagggaaaagaaagaggCGACATAAGCACTGGCTGTGTGAGGACTCCTCAGCCGCCGTACGTTCCAGCCCTACTGTGTGCCACCCAGACCTTACACACCATGATTCAGGAGGTCTTGGTGTGAAACCATATTTGTTTGCTTTTACCATGCACAGCATCCGGTTTCCAGTTATGTGATTGAACTTCATCGTTGTGTGCttgaagcatttaaaaaaaaaaaaaaaaacatcagtacCAGATTCTGAGTTTCTGTCTCCAAACCGATAAATGTATCTAGTATGAGTCCATCCCAAGTATTTTTTACCCATTACAAACAGATGCACTGCCAGTCCAAACATTGCACATACAGGCCAACACTTGTGATAAGAGACAGGAGCAACAAGTTCCATAGTGAGTCCAGCATGCCTGCAGGCGAGTGTTAACTGTAAATTAGCACGTGCCCTTGCTCAAGATGTCTCTCGAATGCCATGGAGGAAATGAGTAACAACCACCTACACCGCCATACTTTGATTTTGAAAGTACAacaatagaattttttttttttcatatctcTCTCGATTATATCTGAAGCAAAGGTGCTTTCATTGAGTAGGTGAAAAATGTGTAGGCAAGGACATCAAGAGCACATGGGTGCTAATTGCAGTATGAACGTAAGAGACATATcacaaaatgtactgtaaatatgctactttatataaattgtgaaaaatgtaatgGAGAGACAAAGCtatgtgtttattaatgccAAAACAAAGCACTTCATTCACAGCATTTACTGTATCAACAATTactgtgtgtttactgtaaaGGTATGCGTGTAACAAATGTGTCTATTGATTGAAGTACTTTTTTGTTGTGATGCAGCAGTGGATTTCCCTTAAATTTTTCATGTTAATTTTTCTCCTATGTtcctaaaaacataaataaaatagatcTATGGAGAAATGCTGATGAAAGCACATGTGTAAATAAATAAGTGAACCAAA

Function

GO: NA

KEGG:

id description
K24930 TTC9; tetratricopeptide repeat protein 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU273099 lncRNA upstream 25835 10425165 ~ 10425815 (+) True G201558
TU273040 lncRNA upstream 63541 10385585 ~ 10388109 (+) True G201523
TU272989 lncRNA upstream 66235 10378881 ~ 10385415 (+) False G201478
TU272991 lncRNA upstream 66235 10380131 ~ 10385415 (+) True G201478
TU272988 lncRNA upstream 69135 10378881 ~ 10382515 (+) False G201478
TU273135 lncRNA downstream 32315 10488905 ~ 10495727 (+) True G201589
TU273137 lncRNA downstream 41063 10497653 ~ 10497925 (+) True G201591
TU273140 lncRNA downstream 168055 10624645 ~ 10624846 (+) True G201594
TU273142 lncRNA downstream 194698 10651288 ~ 10651619 (+) True G201596
TU273149 lncRNA downstream 207939 10664529 ~ 10664857 (+) True G201602
XM_039786504.1 mRNA upstream 91805 10355927 ~ 10359845 (+) True oip5
XM_039786500.1 mRNA upstream 100937 10345019 ~ 10350713 (+) True ndufaf1
XM_039785096.1 mRNA upstream 210492 10235018 ~ 10241158 (+) True si:ch211-10a23.2
XM_039786874.1 mRNA upstream 258536 10182109 ~ 10193114 (+) False rdh12
XM_039786873.1 mRNA upstream 258536 10182123 ~ 10193114 (+) True rdh12
XM_039786468.1 mRNA downstream 453321 10909911 ~ 10919714 (+) True gmfb
XM_039786375.1 mRNA downstream 463678 10920268 ~ 10927808 (+) True cnih1
XM_039786376.1 mRNA downstream 463683 10920273 ~ 10927808 (+) False cnih1
XM_039785192.1 mRNA downstream 477672 10934262 ~ 10944673 (+) False LOC120548749
XM_039785191.1 mRNA downstream 477672 10934262 ~ 10944673 (+) False LOC120548749
XR_005637396.1 other upstream 100937 10345019 ~ 10350713 (+) False ndufaf1
TU272884 other upstream 334044 10112020 ~ 10117606 (+) True G201399
unassigned_transcript_1147 other upstream 359060 10091682 ~ 10092590 (+) True LOC120549807
TU272875 other upstream 369648 10081350 ~ 10082002 (+) False LOC120549808
unassigned_transcript_1146 other upstream 370994 10079725 ~ 10080656 (+) True LOC120548906
XR_005637354.1 other downstream 1008821 11465411 ~ 11485526 (+) False smc6
XR_005637295.1 other downstream 1068152 11524742 ~ 11560413 (+) False si:ch73-242m19.1
TU273733 other downstream 1440307 11896897 ~ 11897483 (+) False tulp4b
XR_005637440.1 other downstream 1449251 11905841 ~ 11913857 (+) True slc18b1
TU273740 other downstream 1449318 11905908 ~ 11909271 (+) False slc18b1

Expression Profile