RNA id: TU273140


Basic Information

Item Value
RNA id TU273140
length 202
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G201594
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 10624645 ~ 10624846 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tctctctcatgggcgggccaaattctctgggcgggcaaagcagagaaaggggaggtaacctttctccttatgacctcataaggagaagattccagatcggcccatctgagctttcattttctcaaaggcagagcaggatacctagggctcggtttacacctatcaccatttctagccactgggggaccataggcaggctggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU273137 lncRNA upstream 126720 10497653 ~ 10497925 (+) True G201591
TU273135 lncRNA upstream 128918 10488905 ~ 10495727 (+) True G201589
TU273099 lncRNA upstream 198830 10425165 ~ 10425815 (+) True G201558
TU273040 lncRNA upstream 236536 10385585 ~ 10388109 (+) True G201523
TU272989 lncRNA upstream 239230 10378881 ~ 10385415 (+) False G201478
TU273142 lncRNA downstream 26442 10651288 ~ 10651619 (+) True G201596
TU273149 lncRNA downstream 39683 10664529 ~ 10664857 (+) True G201602
TU273153 lncRNA downstream 43440 10668286 ~ 10677839 (+) True G201603
TU273160 lncRNA downstream 59455 10684301 ~ 10748176 (+) True G201607
TU273163 lncRNA downstream 63160 10688006 ~ 10690311 (+) True G201610
XM_039786506.1 mRNA upstream 168055 10451650 ~ 10456590 (+) True LOC120549517
XM_039786504.1 mRNA upstream 264800 10355927 ~ 10359845 (+) True oip5
XM_039786500.1 mRNA upstream 273932 10345019 ~ 10350713 (+) True ndufaf1
XM_039785096.1 mRNA upstream 383487 10235018 ~ 10241158 (+) True si:ch211-10a23.2
XM_039786873.1 mRNA upstream 431531 10182123 ~ 10193114 (+) True rdh12
XM_039786468.1 mRNA downstream 285065 10909911 ~ 10919714 (+) True gmfb
XM_039786375.1 mRNA downstream 295422 10920268 ~ 10927808 (+) True cnih1
XM_039786376.1 mRNA downstream 295427 10920273 ~ 10927808 (+) False cnih1
XM_039785192.1 mRNA downstream 309416 10934262 ~ 10944673 (+) False LOC120548749
XM_039785191.1 mRNA downstream 309416 10934262 ~ 10944673 (+) False LOC120548749
XR_005637396.1 other upstream 273932 10345019 ~ 10350713 (+) False ndufaf1
TU272884 other upstream 507039 10112020 ~ 10117606 (+) True G201399
unassigned_transcript_1147 other upstream 532055 10091682 ~ 10092590 (+) True LOC120549807
TU272875 other upstream 542643 10081350 ~ 10082002 (+) False LOC120549808
unassigned_transcript_1146 other upstream 543989 10079725 ~ 10080656 (+) True LOC120548906
XR_005637354.1 other downstream 840565 11465411 ~ 11485526 (+) False smc6
XR_005637295.1 other downstream 899896 11524742 ~ 11560413 (+) False si:ch73-242m19.1
TU273733 other downstream 1272051 11896897 ~ 11897483 (+) False tulp4b
XR_005637440.1 other downstream 1280995 11905841 ~ 11913857 (+) True slc18b1
TU273740 other downstream 1281062 11905908 ~ 11909271 (+) False slc18b1

Expression Profile