RNA id: TU273160


Basic Information

Item Value
RNA id TU273160
length 1348
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G201607
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 10684301 ~ 10748176 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTTTTTTGTGAACAAGATAGTCAAAGATTTGTAATTTGCACTAATGTAACACATATCCTatccttctaaaaaaaaaagaagctaaaatCGGCATTCCtaatgaaatatgaaacaaaagcCCAAGTTCAGGTTCACAGTCGGCTTCCTTTGGGCTCCGACCCTCAACCTCAGGTATTGATCAACAAATGGCCAGCTCTGGAAAAATGCATGAGGTAATGGCGGAGAACTCCACTAGGTTCTGGAGGTAGGAGGGgtgtttcatagaaacagcctTCAATGAGAAGATTCTCAATTTCCATATCTACATGCTCGGTATTTATTGTCTTATTCttgtatttcacaataaaagattTCAGCTGTTGCATGAGGCTGAGTCTGGCTGCCATTTTCCTTCGTATGCCTCAAAGCCCCCGAGCTTTTAACGTGTGACTGAACTGTAAGTCTCTTTTCAACCAAGCGGTAAGGGTCAATGCACGGCCTGatgcattacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactaagcgTACGCTCGGCACACTCAATCTTTTCTGCTTAAAGGGTCAGTAAAGGTTTGCCGTTAGCCACACCTCGGGCAGACCCAGAAATGACATATCCTCACCTCAACTTCTTTGCCTTGTTGATGCGgtctaaatatataaaaagacaAAGCTGTGACTCCACATGCCAAAAGTTCTTACATTATTCTTTCAAGCAGAAGTTTGACACTttaggaaatacacttattcacttttttgctgaaagttagatgagaagaggGAAAGGATCTTCTCGTTAACTCTcgggcaagaaagcgaataaacATCCAACTATAAATCAAtgaatctctgtgtgtgtgtggtttttttgtgtgtgtttttttgggtgTGTGTCTCCCGCATGCGCAGTACAGCAGCAGCGGGGTCGGGGAGTTGCTACATCCCTAGACGGCTGATTGCGGTGCAAGGCTCTGCTACCAATGGAGAGCCTACGAGCCTCTTAGGGCAGCAGGGGCGGGATCAAAAAAGCAACTAGCGACAAATCTAGTGACTTTCTGTACAAGAGAGACGCCAGTATTGTGCCTAGAGAGAGCGAGGTCTTTCTCTCTTGCGGTCGcaacatctttttttctctctctctctctctctctctctctctctctttcaccttCCAACTCTGCCTCtattctctctctatctgctcTGGTGTTGTTGCCCAGCGGCGGCTCTCCGCGGTAGACAGGTCTAGCAGCGAGGAGCGACAGACGCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU273153 lncRNA upstream 6462 10668286 ~ 10677839 (+) True G201603
TU273149 lncRNA upstream 19444 10664529 ~ 10664857 (+) True G201602
TU273142 lncRNA upstream 32682 10651288 ~ 10651619 (+) True G201596
TU273140 lncRNA upstream 59455 10624645 ~ 10624846 (+) True G201594
TU273137 lncRNA upstream 186376 10497653 ~ 10497925 (+) True G201591
TU273176 lncRNA downstream 8324 10756500 ~ 10757490 (+) True G201619
TU273180 lncRNA downstream 35779 10783955 ~ 10799940 (+) True G201622
TU273219 lncRNA downstream 152501 10900677 ~ 10905920 (+) True G201654
TU273287 lncRNA downstream 380805 11128981 ~ 11134169 (+) True G201714
TU273293 lncRNA downstream 439854 11188030 ~ 11188350 (+) True G201720
XM_039786506.1 mRNA upstream 227711 10451650 ~ 10456590 (+) True LOC120549517
XM_039786504.1 mRNA upstream 324456 10355927 ~ 10359845 (+) True oip5
XM_039786500.1 mRNA upstream 333588 10345019 ~ 10350713 (+) True ndufaf1
XM_039785096.1 mRNA upstream 443143 10235018 ~ 10241158 (+) True si:ch211-10a23.2
XM_039786873.1 mRNA upstream 491187 10182123 ~ 10193114 (+) True rdh12
XM_039786468.1 mRNA downstream 161735 10909911 ~ 10919714 (+) True gmfb
XM_039786375.1 mRNA downstream 172092 10920268 ~ 10927808 (+) True cnih1
XM_039786376.1 mRNA downstream 172097 10920273 ~ 10927808 (+) False cnih1
XM_039785192.1 mRNA downstream 186086 10934262 ~ 10944673 (+) False LOC120548749
XM_039785191.1 mRNA downstream 186086 10934262 ~ 10944673 (+) False LOC120548749
XR_005637396.1 other upstream 333588 10345019 ~ 10350713 (+) False ndufaf1
TU272884 other upstream 566695 10112020 ~ 10117606 (+) True G201399
unassigned_transcript_1147 other upstream 591711 10091682 ~ 10092590 (+) True LOC120549807
TU272875 other upstream 602299 10081350 ~ 10082002 (+) False LOC120549808
unassigned_transcript_1146 other upstream 603645 10079725 ~ 10080656 (+) True LOC120548906
XR_005637354.1 other downstream 717235 11465411 ~ 11485526 (+) False smc6
XR_005637295.1 other downstream 776566 11524742 ~ 11560413 (+) False si:ch73-242m19.1
TU273733 other downstream 1148721 11896897 ~ 11897483 (+) False tulp4b
XR_005637440.1 other downstream 1157665 11905841 ~ 11913857 (+) True slc18b1
TU273740 other downstream 1157732 11905908 ~ 11909271 (+) False slc18b1

Expression Profile