RNA id: TU273180


Basic Information

Item Value
RNA id TU273180
length 439
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id G201622
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 10783955 ~ 10799940 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGAGCCATTCTCCGCCGTTGTTGGAGAACTCAATGGCGTTGACACAGCCGAAGTGTCCGAGCATATCCTTCTTGTAGAGGCTGGTGCACCCGGCCATCCTGCGTCTCTGGAATTCCTCCTTCATGAGCGGCTGCCCAGTCAGCTCTCTGCGGGACAGAAAGCCCACTGAGGAGCGCATACCGCAACCCTTCAGCTCCTTCATTATCACCATGCAAAAATACTCTCTGCCTTTTGTTCTTCACCACTGCACCGTGGACATCTAATAGTTGGGTTGATGTGGCTCACGGTTGTTCTTGCTCCGTTTGGTCTACATTATGGTGGAGCCCCGCTGCCTGCCCGCTGGTGTCGACGTTGTTTTGTCCCTCCTCTGTCTTCTCGGCAGTCCCAGCAGCAGCTTCCTGCTCCGGTGgaggatctctctctctctctctctctctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU273176 lncRNA upstream 26465 10756500 ~ 10757490 (+) True G201619
TU273160 lncRNA upstream 35779 10684301 ~ 10748176 (+) True G201607
TU273166 lncRNA upstream 72959 10702853 ~ 10710996 (+) True G201613
TU273163 lncRNA upstream 93644 10688006 ~ 10690311 (+) True G201610
TU273153 lncRNA upstream 106116 10668286 ~ 10677839 (+) True G201603
TU273219 lncRNA downstream 100737 10900677 ~ 10905920 (+) True G201654
TU273287 lncRNA downstream 329041 11128981 ~ 11134169 (+) True G201714
TU273293 lncRNA downstream 388090 11188030 ~ 11188350 (+) True G201720
TU273407 lncRNA downstream 491159 11291099 ~ 11312327 (+) False LOC120549737
XR_005637450.1 lncRNA downstream 525654 11325594 ~ 11366801 (+) True LOC120549871
XM_039786506.1 mRNA upstream 327365 10451650 ~ 10456590 (+) True LOC120549517
XM_039786504.1 mRNA upstream 424110 10355927 ~ 10359845 (+) True oip5
XM_039786500.1 mRNA upstream 433242 10345019 ~ 10350713 (+) True ndufaf1
XM_039785096.1 mRNA upstream 542797 10235018 ~ 10241158 (+) True si:ch211-10a23.2
XM_039786873.1 mRNA upstream 590841 10182123 ~ 10193114 (+) True rdh12
XM_039786468.1 mRNA downstream 109971 10909911 ~ 10919714 (+) True gmfb
XM_039786375.1 mRNA downstream 120328 10920268 ~ 10927808 (+) True cnih1
XM_039786376.1 mRNA downstream 120333 10920273 ~ 10927808 (+) False cnih1
XM_039785192.1 mRNA downstream 134322 10934262 ~ 10944673 (+) False LOC120548749
XM_039785191.1 mRNA downstream 134322 10934262 ~ 10944673 (+) False LOC120548749
XR_005637396.1 other upstream 433242 10345019 ~ 10350713 (+) False ndufaf1
TU272884 other upstream 666349 10112020 ~ 10117606 (+) True G201399
unassigned_transcript_1147 other upstream 691365 10091682 ~ 10092590 (+) True LOC120549807
TU272875 other upstream 701953 10081350 ~ 10082002 (+) False LOC120549808
unassigned_transcript_1146 other upstream 703299 10079725 ~ 10080656 (+) True LOC120548906
XR_005637354.1 other downstream 665471 11465411 ~ 11485526 (+) False smc6
XR_005637295.1 other downstream 724802 11524742 ~ 11560413 (+) False si:ch73-242m19.1
TU273733 other downstream 1096957 11896897 ~ 11897483 (+) False tulp4b
XR_005637440.1 other downstream 1105901 11905841 ~ 11913857 (+) True slc18b1
TU273740 other downstream 1105968 11905908 ~ 11909271 (+) False slc18b1

Expression Profile