RNA id: XM_039786559.1


Basic Information

Item Value
RNA id XM_039786559.1
length 6784
RNA type mRNA
GC content 0.52
exon number 20
gene id znf106a
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 9307844 ~ 9324685 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATGGATGAGCACATGAGAAGTATGCTCCACCATCGTGAGCTGGAGAAGCTCAAAGGCCGGGACTGCGGACACGAGTGCAGAGTGTGCAAGGTAACGGTGGTGAGCCTGACCGATTATGCCAGCCACATTTCCAGTCCAACGCACAAACAGAATGTGGAGGCCACAGAACATAAGTATGCTGGGAACGACCGTGAAGAGGACTACTTCGACCAGGCGTTGGTGGACCTGATTGAGAAGAGAAAAGAACAGCTCAGaaaagaaaaggaggctgctgctgcaaagctGGCAAAAGAAGAAGAGGCTCGAAGGAAAAAGGAGGAGATGACTCAGAGGTTAAAAGAAGCTAAGGAGCACTACCGGCTGCAGTATGCCTTCAAGCATCAATCGCAGGGTTTTGGTGGATCCACTCACCACAGAACTTGGTACAGGGGCAACCAATATAATTCCAATGCAGATGCACAACCCTGGCAGCACAGTAAACAGGGAAAGAGTGCCACCTGGCATGCTCAGGAGCCTCCCAATCTTCAGAAGTTTGGATCTGGGGAGTTTGGTGGTGGAAGCTTTCATAGCCAGGAAGGTTTGGGCAACAAGCAGTGGGATCATGGTGCATTTTCTGGCAATCAACGAAGTCGACTGCCTTGGCTCAGCAATGGAGGCAGTAGTAACGGGGTCTATGGTCGAAACAACATTGCCCAGAACCACCAAAAGAGCCGGCCCCTGAGCCTTTTAGGGCCTGTTCCTCTCTATCCCCCTCCACCCTGTTTTTTTGGCCAGGCTCTTAACCAGTTTCAAAATACAGGCAATGGCCTGGGAGGTCAGCACTGTGATGGGCTTAAGAATGGGGAGGGGCAGACAGCAGAACCTGACCACAGCAGCAGTAAGAGCTCTAAGGCCTTTGGTAGCAATCCAAAGCTGGACAAAGCCTGCCGCTGGTCGCCCTATCCTGTCACAAAGGGTTTTGAATCCTTACCCAATAAGGATACCAACCCAAACTCATCAGAGAAGCACCCCATAGTCCCCAAACCCCAGAAACAGGATAAGGCACAGGAAACCAGTGCTTTTAACAGACAGTCCCGACCTGAACAGAAACCGGGACAGTTGACCTCGAGTGGACAAAGTATGGAAGAGAAAGGGAGACATAAAACGAGCCCCAAAACCAAACCCAGAGAAAGGAGTAGCAGCGGCAGTAGAAGCAGCAGTGCTCAGACAGACGCCCCCCAGAACGCCGCATCCGGTCCCTCAAATCAGAAGGCAATTAAGCCATTGCTACATAAAGATTGGAAGATGTCCTCACTTCCTGGTCTCAACGGTGGTGCTCAACACAGCATGGCCTCAAGTCAAGCGCACCCACAATCAAAATCAACCGCAAAGCCGAGTGGATTCAGTTCCCAGGCTCCACCTGTCGGGCCCCTTCTGTCAAGGCAAGAACGGCAGCTCCCAGAAACATTCAAGAAAGCCAGACAGATTGTGTTAGAAAAGAGGGGCTCTTTGGATAGCTCTAGAAACAACAGGATGGAAATGACACTGCACATTGtggaggagcagcagagggatCACGTACAGAGTCAGATTggcatgaacaaagaaaacaggcaGAATGCAGCTAAAACAAATCTGCCTGACTCAGCCAGGCTGGAAAAGCCCGCGTTGCAATCTTCAGACAGCAGCCAGTTTCTCCAATCATTGCAAGTCAGCACTTCTACCACGGAGAGCTCCGAGCCTGCAGCCTCAAGCCGGGAAGACGAGGAGAACAGGAGGAGAGTGGAGAAGGAAACGTGCCCGGGGGCCCCAGATGAAGCCATGCAGGCTGTCGAAGCCGGGCAGAGCTCAGAGAGTGACACCTCCAGGAGTGGTGAAGCTCAGACGGGCTCAGGGTCAAACACATCGAGTCTGTCCAAACTTGACCTGCCTCCCGTCTTGAAACGTGACCTGACCAAACACATCAGCACCAAGAGTAAAACGGGTGGCCATGAGCCCAACCTGAACATTGCCAGACGGGTGCGAAACCTGAGCGAGTCGCGGCGAAGTGACACAGAAAAGGACTCGGGGCTCAAACCAACTGTGCGGCAGCTCATCAGCTCCTCCGGGTCTCGACGCAATGTGAACTGGGAACAGGTGTATCAGGAGGTCAGGAAGAAGCAAGACAAAGGGAAAGGCATGCCGAGGTTTGGGATAGAAATGGTGCCGATAGAGCAGGAGGACCAGAgccaggaggaagaggacattCCCCTGCTAGAGGGTTTCCAGTGGGAGTCTATGATGGACAACTCTGCCTCCCGAAAGCGTTCCTTATCCGAGAGCAGCATCGCCCCTGCATCCTCTCACTCCCTGTTTACATCCCTCATGTCAAAGGAGACGGCACAAAGAGAAGCCCGAAGCTCAGAGCAGCAGGGATCCTCCGTTTCTCCCGATCCCATATTCGCTCAAGGGAACAAAGACACTCAACGTCAGCAAGAGGTGGAGCAGATGCTCGGCCAGTTTGAGGCTTTAGCACAGAAGCAGCCAGACAAGCTAACGTCTGCGACAGTGAAGGCCCTCCAGCGGTCTGATTCAGTGCTCGGCGACAGCAGTTCGGGGACGGAGCTGTACGACAGCCAGGGAACAGGAAAAAGACGAAGAGCAGCTGGGGACGTTCCAAGTGCAGAGACGTCTTCCTtgaaacacaataacaaaagaaggAAAGTCAAATCCAAAAAAGAGCGTTTACAGATcgaccagctgctggctgtgtCTCTGCGGGAGGAAGAGCTGAGTCGCTCCCTGCAGACTGTGGACACCAGCCTGATCCAGGCCCGGGCTACGCTGGAGGCCGCCTACATAGAGGTGCAGCGTCTCATGGTGGTTAAACAGCAGATGACTGGAGAGATGAGCACACTGAGAAACAAGCGCATCGAGTTACTGAAAGGAATGCAAGGTAGTTTGGAGGAAGCACCTCAGGTCAAactgaaagaagaaaagatgGATTCAGTAGAAGCTGAGCCACACATGCCCTCCTCCATTCTGCTCTCCTCTGACTCTGCTGCCCCCCCCAGTCCTGGTCCTCCTGCCGAGCgtgcctcccctccctcctccagcCTCCCCTTTATGCCTTTAGTTATCAAACAGGAGCCTCTGTCTCCTGTCCATGTCTGCTCAGAGCCGGACCCTGTGGGCAATATAACCCACTGTGCTCACAGCACCACTCCCGAGCTGCCTGTCGCTCCTGCTGCAGCCTCTCCGCCAGACCCTACCCTTCATTTCCAGCCATCTTCTGAAAGAAAGCCAGAGCTGTACCAAACGAACACAGAACACAATTGGGACAACTTTGCCGAGCCTGCAGACTGCAAGGAGAGCTTGTCGGCACTGGTTGAGACAATGGAAAAGTCCATACAGGCAAATCAAAACTCTCTTACCTCTTTGTCTGACTCCAAAACTCCCATAAAGCTTCTCTTGGCCAGCAGGAGGGGCTCCGAGGAGGGGAGCGTTATTGACTGTGCAGCCACACAGTCCTTTGAGCCCCCCTCCATCCtcaatctgcctgcctctccaTCTGAACTGAGGAACGGAAAGCGTGTAAGGAAGCTGAAGAAGAGGAAGGTGTTGAAGAAGGCCCAGGGGACGGAGCAGGCCGAGAGCAGTGACACCGAGATAGATGGGGAGGCCTTGAGGCCGAGGTGGCTTCGACCACGCAGGAGAAGCTCCCAGGTCAGCACCTCCACTCTCCCTTCAGAAGATAGAGAGGGCGACATGAACATGGAGGGCGTTGAGGAAGCATCTAGACGGCTCTTTCCGACCATCAAACTTCAGAAAGAAGACCCCAAATCCCCCAAACACATGGTGGAGCTTCCCAAGGTAGCCCGTGCCGAACTTGCGCTGAGCTTGGATTCAGAAGAAAGCATGGAGGTCACCGCAGCCGGTCAGCAGCCCCACATGGCTGCCCTGGTTCCAGCTTTCCCTCCAGCCCAGCTCCCAGACTCCTCCAGACCCGAGCCGCAGAGCCTGGCCTGCAACGAGGTCACCTCCACCAGCGACATGGATGTGTGTCGATCCTCGGAGAGTGACATGCCGTTTCCCATCACGTTGCCTACGATAACGAAGACCTCATCAGATGCGTTCTCTGACCACGGTGAGGATGATTTGCCCACCGAGGGTGTGTTCGAGGGCCACCAGGAGGCGGTGAACGCCATGCAGATCTACAACGGGCTGCTGTACACGTGCTCCGGAGACCGGACTGTCAAAGCCTTCGACCTGGTGAGTCATAAATGTGTCGGTGTGTTTGAGGGTCACAGCTCCAAAGTGAGCAGCCTGTTGGTGTCGGCGGCTCCCAGCCTGCACCATCGCCTTTATTCCGGGTCCAGTGACCAGACCATCTGCTGCTACAGTCTCAAGACGCGAGAACTGGAGCAGCAGTTCTCTCTGTCAGACCGAGTCCTCTGCCTCCACAGTCGATGGAAGACTTTGTTTGCCGGTCTGGCAAACGGCACAGTGGTGACCTTTAACCTCAAGACAAACAAGCAGATGGATGTGTTTGAGTGCCACGGGCCGCGAGCCGTGAGCTGCCTGGCCTCGTCGCAGGAGGGAGCCCGGAGGATCCTGCTGGTCGGCTCCTACGACAGCACCATCAGCGTGAGGGACGCCAAGAACGGCCTGCTGCTGCGCACACTGGACGGACACATCAAAACTGTGCTCTGCATGAAGgTGGTCAATGACCTGGTATTTAGTGGATCCAGTGATCAATGTGTCTACGCACACAACATCCACACAGGAGAGCTGGTGCGGGTCTATAAGGGCCACAGTCACGCTGTCACCGTGGTGTCCGTCCTGGGGAAGGTGATGGTGACCGCCTGTCTGGACAAACTGGTCCGCATCTACGATCTACAGTCTCACGACCAGCTGCAGGTCTATGCTGGACACAAGGACATGGTGATGTGCATGGCTATCCACAAGAACATGATCTACACGGGCTGTTACGACGGCAGCGTGCAGGCCGTCAAGCTGAACCTGATGCAGAACTACCGCTGCTGGTGGCACGGCTGTTCGCTGGTGTTCGGGATGATGGAGCATCTGCAGCAGCACCTGATCAACGACCACACCGGTGCCAACTCCCAGACGCTGAAATGCCGCTGGAAAAACTGTGAAGAGTTTATCTGTGCACGCAACAGCTCCAAGCagggCATGCTGATGCACATGCAGAAACATGCTGAGGAGACTGAACTGGAGCCTTAAGGGCTGCTGGTGGGAACACTGagccctccctcccttccctgcTATctttacccccccccctcctcctccctgtaaaCCTCCcatattggggggggggaaatgatGTTGGGACCCACTTAACCTAGCAGCGCTCCTGTCGAGCCTGACGACTCCATACTTTTTGTTTGGTGTTGGAATCCGACCATAATACAATCGTGAAAGGAGGGTTGGttgtgctgttgttgttttttacgttCTACAAAAACGcgccttcctctctctctttttctctttctgtctgaccACTGCAGTTCCTCTACTCACTGACCAAAGTAAGACAAAGAAACACGTGAATTTTGTCAATTGAAGAAACTTCAGCGTTGCCGGTATCAGAGGGATTTGttaacgctttttttttttgttgtgtttaaaaCCGCAACAGAAACCGATAATCGTCTTCCAGGTTGGTTGGCCACAATATGGCATGGGCTGAgagatgtttttgttgttgtagtgCAGTTATGATGTGTCACGTTGAGCAACCTGTAgtcatttttacttttcttaAGTTGCTAATATTCACTCAAAGTAACCTTCGGTTTATGAATATGAGTGATGAAGTTTTCTGTCTCCCGGGCCGGTGTGTGCGATTCCTTGTTTCAACAGAGTTTCATTGAAGTGacacaaatttatttatttaattttttattgtgTTCAGAAAACAAATTTCTAACACGcatcttcttttgttttgttagcGGTTTAGGATCccattctttttgttgttgctcaGTGATATTAAGGCGTCGAGGGACTTTGGTGCAGTGCTGTGTGACTTGGCCTGAAGTTGCCATTTGAGAATTTCCATTTGCAGTGATAACGAtggtggcgtgtgtgtgtgattgtgtgtgcgtgtcgtcCTACGCGTTTATCGTGTGGTTTTATTCGTCCTAAATGTCAACAAAGTGGTTCAACCTCGTTTGGTGAACCCTGTTTTCCATGAGTGAGTGtgctgcattgttttttttaatgacacagTTTCCTCCTTGGAGatgttggttgttttttttggggaaatttagttttttaaaatttGGAGCATGGAGCAGAAGGCGCCAACGCTGTTTTTCCCACAGTAAAGGGTAGTTTTTCTAAAGAAGTGTGGAGGTGAAGGATGTTTGGAGGAGGTGTTCGATGGAGGAGCTTGAAGGGAAGAATTAGGACTCATCTCCCATGCCATACCTCATCCCCTAAAACAGGCAAGTTGGTAACACACAGCCACTTTTTTAAAAGGCATTTTCAACCAATTTTAACCAGTGTGAAAGCCCAGCCGATGCTCTCTTTTTGGCAGACTTTGGTGTGGTTCCAGCTCTCTTGGTtgtgtcctctctctgttgAGGAGTCCACAGCTGGCATCTTCCAAACTCTGCTCATCTGCTCATTGTTTATATCTGAGAAAAAGCGTGCACTTCACTTCTCTTACCTGGCATTCCTGAGTTTCTTCAAGTTTTTCAGTTATCAAAAGTTGTGAAGAGATATTTTTTAAGAAAGTGCAATCTAAGACattgttattaataataataaaaaatgttaaaagcc

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K24691 ZNF106; zinc finger protein 106

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272520 lncRNA upstream 33867 9268917 ~ 9273977 (+) True G201134
TU272414 lncRNA upstream 88189 9218738 ~ 9219655 (+) True G201056
TU272381 lncRNA upstream 120526 9165123 ~ 9187318 (+) False G201026
TU272378 lncRNA upstream 131878 9165123 ~ 9175966 (+) False G201026
TU272568 lncRNA downstream 4800 9329485 ~ 9330833 (+) True G201175
TU272566 lncRNA downstream 11960 9336645 ~ 9343993 (+) True G201173
TU272641 lncRNA downstream 173811 9498496 ~ 9498783 (+) True G201239
TU272652 lncRNA downstream 237993 9562678 ~ 9612629 (+) True G201242
TU272656 lncRNA downstream 262275 9586960 ~ 9590784 (+) True G201246
XM_039786558.1 mRNA upstream 5575 9296321 ~ 9302269 (+) True pacc1
XM_039785405.1 mRNA upstream 77604 9224142 ~ 9230240 (+) True hhipl2
XM_039785821.1 mRNA upstream 101315 9192950 ~ 9206529 (+) True LOC120549154
XM_039785210.1 mRNA upstream 239966 9040266 ~ 9067878 (+) True alms1
XM_039786685.1 mRNA downstream 46417 9371102 ~ 9391466 (+) True LOC120549640
XM_039786686.1 mRNA downstream 69089 9393774 ~ 9431047 (+) True vps39
XM_039786687.1 mRNA downstream 69089 9393774 ~ 9431047 (+) False vps39
XM_039786688.1 mRNA downstream 117863 9442548 ~ 9497538 (+) True galnt16
XM_039786689.1 mRNA downstream 118692 9443377 ~ 9497538 (+) False galnt16
TU272417 other upstream 86542 9220641 ~ 9221302 (+) True G201057
XR_005637554.1 other upstream 2407500 6900139 ~ 6900344 (+) True LOC120550068
XR_005637532.1 other upstream 2413422 6894216 ~ 6894422 (+) True LOC120550044
XR_005637539.1 other upstream 2418927 6888711 ~ 6888917 (+) True LOC120550052
XR_005637535.1 other upstream 2420288 6887350 ~ 6887556 (+) True LOC120550047
TU272715 other downstream 384179 9708864 ~ 9817625 (+) True G201287
TU272771 other downstream 665887 9990572 ~ 10007687 (+) True smoc1
unassigned_transcript_1139 other downstream 705311 10029996 ~ 10034827 (+) True LOC120549541
unassigned_transcript_1140 other downstream 705875 10030560 ~ 10031384 (+) True LOC120549542
unassigned_transcript_1141 other downstream 715458 10040143 ~ 10040762 (+) True LOC120548903

Expression Profile