RNA id: TCONS_00071498


Basic Information

Item Value
RNA id TCONS_00071498
length 2628
RNA type mRNA
GC content 0.47
exon number 17
gene id XLOC_036610
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 37228611 ~ 37249991 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCGTCCATTTTGGGCAAAGCAGGAAGTTGTCTTGTGGGGAAAACCTCATGACAAACTAAACCGATTCTTGTCAAATATCAATAGACATATCCGTCGCTCTTTGTTTTTGTTAGAATATTTGATCGTTGTGTGTGTTGCTGGTCTATAAGCGAATCTGACCATTTGTTTTTGCAGTTCTTGGCTTCACGCGCGTCGCAGAGGTCGCGACGACAAACGGAGTAAataaaaacagCGTCTGCTGCAGAATCGAGCGTGTTATTTATAAACCAGTAAGACCACAACTCGGCTGTCAGGATGGCAGACGACTTCGACGTTGAGGCCATGCTAGAAGCTCCTTATAGGAAGGGTGAAAGCAAGTCATCTAGCGCCAATGGTCACAATGAGGAACGCAGCAAGAAGAAAAGACGCAGCCATAGTCGAAGTCCAAGCCCAGGCCGAAGGAGGAGTAGAAGCGGGGGTCGCAAAAAGAGCAGAGAGCGCCGCAGGAGTCGCAGCCGTGAGCGGAAGCCTTCACGGAGCAAAGAGCGAAAACGTTCACGATCCCGCAGTAAGGATCGCGGTGGACGTAGCCGTGGACGCAAAAGCCCTTTTATGGGGCAGAAATTAAATGGTGGTCCTGGAGGGAAGACCGGCCCACAACATTTTCCCAAACACAGTCGAAAACGGTCTCGGAGCAAAAGCCCATTTAAGAAGGAGAAAAGCCCATTCAAGAAGGACAAAAGCCCATTTAAGAAGGACAAAAGCCCTGTCAGGCAGCCGATAGATAATCTGAGCCCTGAGGAGAGAGATGCCCGTACGGTGTTCTGCATGCAGCTCGCTGCCAGAATTCGACCCAGAGATCTGGAAGACTTCTTCTCAGCAGTAGGAAAAGTCCGTGACGTCAGGATGATATCAGATAGAAATTCTCGGAGGTCGAAAGGCATTGCCTACGTTGAGTTTGTGGATTCAACATCAGTCCCACTAGCAATCGGCCTCACAGGACAGAGGGTGCTTGGAGTGCCTATCATAGTCCAGGCCTCACAGGCTGAGAAGAACAGAGCAGCAGCCATGGCCAGCATGCTCCAGAGAGGTGGCGCAGGGCCCATGCGGTTGTATGTGGGTTCGCTGCACTTTAACATAACCGAGGACATGCTCAGGggtatttttgagccctttggaAAGATTGAGGGCATCCAGCTAATGATGGACAGTGAGACTGGCAGGTCAAAAGGATACGGCTTCATATCAtttgcagaTGCAGAATGTGCTAAAAAAGCCCTGGAGCAGCTAAATGGCTTTGAGCTTGCGGGGCGGCCAATGAAGGTGGGTCATGTTACTGAGCGATCAGATGCCTCTTCAGCAAGCTCATTCTTGGACAATGATGAGCTGGAGAGAACTGGCATTGACTTGGGCACGACAGGTCGTCTACAGCTGATGGCAAGACTTGCAGAAGgtACAGGACTACAGATTCCTGCCGCTGCTAAGCAAGCCTTACAGATGAGTGGCTCTGTGTCATTTGGAAATATGCCAAATGCTTCAGCAACACCTCCTCTTATTCCCAATCCTGGGATGAACCAAGCTATGAACCTTCCAACCCAGCCACTGGCCACACACTGTTTACAGCTCTCCAACATGTTCAATCCACAGATGGAAAATGAACCTGGCTGGGACATTGAGATAAGAGATGATGTCATTGAAGAATGCAGGAAACACGGAGGTGTAATTCACATATATGTCGACAAAAACTCTGCTCAAGGTAATGTTTATGTAAAATGTCCAACTATCCCAGTAGCAATGGCTGTTGTCAGCTCTCTTCACGGGCGGTGGTTTGCAGGTAAAATGATCACAGCAGCCTACGTGCCCCTCCCCACCTACCATAACCTGTTTCCAGATGCTGCCACAGCCACGGAGGTCCTTAGGCCCATGAACCGGTGATCCAGCCAGTGGTTTAGGCTCGGACCTCTGCCTCTTCCTGACCCTGCTTCATCTTGAACCCCAATGCATCTGTATATTTACCGTACAACCGCTTCCCAAATGAACTGCTGTGAGTCTGAGACAGTCCTGTCATGGAAGGCCACCTGATGTATGAAACTAGATCTCACAGTCGGACTGTAATTTCATATTGTATTGTAGCTGGAGCGTGGATCTACAGTTCGAATCACCCTCTCTGTTTCGTCTGTAGTAGTTAACACAAAGTTCAGATCAGCTCCCAGCTATATGTACAGTGGTCTATTGATAAGTGGAAACCTATAACATCATTGCTGTCTCCGGATGAGCTCTCGTGACTCCTGAAAACCGGCTTTGAAGGAGTTTCTGCCGTTTTCTTGAAAGGTATTTGAACTTCTTTCtgtttgctttttctttttaagGTATAAAGAAGGTGTCTTCGGCTGTCAAGTCAAACATGTTTTCATCAGTCTTCGTCTTTTTATGACAGACATTGTGTTGTGAATTATTGGTTCGTTGTTTATTCTTCACTTTTAAGcaaccaaaaaaaaagtttttgttttttgttttcttctggaaAGAGTCTTCTCGAGCTGTTAAGTTTTCTGTAACAACTTTGAATTTATAACTTTTCATAATCAAAAATTGATTTTTCTAAAAGTCTTCTACTTATTAAATAACTTTCACAACACTGTGTAACA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050327-97 Predicted to enable RNA binding activity. Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleus. Orthologous to human RBM39 (RNA binding motif protein 39).

Ensembl:

ensembl_id ENSDART00000061328

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072500 lncRNA downstream 248595 36871197 ~ 36983161 (-) False XLOC_036604
TCONS_00072501 lncRNA downstream 248595 36873084 ~ 36983161 (-) False XLOC_036604
TCONS_00072502 lncRNA downstream 253750 36976998 ~ 36978006 (-) True XLOC_036606
TCONS_00072497 lncRNA downstream 263026 36732916 ~ 36968730 (-) False XLOC_036604
TCONS_00072072 lncRNA upstream 716328 37966148 ~ 37966860 (-) True XLOC_036614
TCONS_00072073 lncRNA upstream 1336233 38586053 ~ 38587434 (-) True XLOC_036622
TCONS_00071528 lncRNA upstream 1688470 38938290 ~ 38938960 (-) True XLOC_036626
TCONS_00072504 lncRNA upstream 1881979 39131799 ~ 39132638 (-) False XLOC_036628
TCONS_00072075 lncRNA upstream 1881979 39131799 ~ 39132638 (-) False XLOC_036628
TCONS_00071494 mRNA downstream 126530 37059751 ~ 37105226 (-) True XLOC_036609
TCONS_00071493 mRNA downstream 130175 37058899 ~ 37101581 (-) False XLOC_036609
TCONS_00071491 mRNA downstream 175134 37046010 ~ 37056622 (-) False XLOC_036608
TCONS_00071492 mRNA downstream 175545 37046989 ~ 37056211 (-) True XLOC_036608
TCONS_00071490 mRNA downstream 187856 37030974 ~ 37043900 (-) True XLOC_036607
TCONS_00071503 mRNA upstream 9578 37259398 ~ 37263524 (-) True XLOC_036611
TCONS_00071505 mRNA upstream 30712 37280532 ~ 37391372 (-) False XLOC_036612
TCONS_00071504 mRNA upstream 30712 37280532 ~ 37391372 (-) False XLOC_036612
TCONS_00071506 mRNA upstream 34534 37284354 ~ 37328112 (-) True XLOC_036612
TCONS_00071507 mRNA upstream 197786 37447606 ~ 37461835 (-) False XLOC_036613
TCONS_00071489 other downstream 263026 36893633 ~ 36968730 (-) True XLOC_036604
TCONS_00071488 other downstream 416534 36815070 ~ 36815222 (-) False XLOC_036604
TCONS_00071467 other downstream 1855399 35376243 ~ 35376357 (-) True XLOC_036587
TCONS_00071453 other downstream 3307245 33906377 ~ 33924511 (-) False XLOC_036577
TCONS_00071452 other downstream 3313179 33906377 ~ 33918577 (-) False XLOC_036577
TCONS_00071508 other upstream 206695 37456515 ~ 37457198 (-) True XLOC_036613
TCONS_00071526 other upstream 1374335 38624155 ~ 38631651 (-) True XLOC_036624
TCONS_00071541 other upstream 2590477 39840297 ~ 39847614 (-) False XLOC_036638
TCONS_00071545 other upstream 2615020 39864840 ~ 39864958 (-) True XLOC_036640
TCONS_00071554 other upstream 2858065 40107885 ~ 40109971 (-) False XLOC_036645

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000146_01864205_01873634.mRNA True 1417 mRNA 0.52 11 CI01000146 1864205 ~ 1873647 (+)