RNA id: TCONS_00072502


Basic Information

Item Value
RNA id TCONS_00072502
length 687
lncRNA type antisense_over
GC content 0.31
exon number 2
gene id XLOC_036606
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 36976998 ~ 36978006 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tatatatatttatttataatattaggcAATAAATATTCACATCTCTCCGAATTTTGTTAAATTTCATATAATCTGTACACAAATAAGATGACTTCATATACCTTTTTTCAAAATTACACTTCGATCTGCTTTGACATACACACTTGTACaagtttacaaataaaattaatcttcTTGGATCAAAATAAATATGCGATCATCTACACATAATGCCACCtgcccatacacattcacacaaacatactcacatacacacacacacacaatcacactccTTTGACATCGTTTCCTATTACACTGTCAATATTAACTCTTACTATGACAGTCTATGTACAATTTCTTTTTTACAGAGCTCAGTAAATACAGACATACTCATGCAATAAAATTCACAGCGGGAAGACACACGGTTGATGAAAAAAGATTTCGgaaatcattaatgaaataaaataaacgcaATTAAAAACTTGTGAATTTCTCATTGATGTACTCTGTCTCATTTCACATTAGAATCTATTAATTTGTTTGTAACTGGAGCCCCATTAATATTCAACATACTGTCCTATTATTTGCGTGGAGTGCTGATCACTAGGGCATAAATATCTTACACACAATAACTTAGCATCACATCATGACTGTTACACTACttctgttaaaaaatatattaaataatacccATAAAAAGTCTCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072497 lncRNA downstream 8268 36732916 ~ 36968730 (-) False XLOC_036604
TCONS_00072499 lncRNA downstream 17002 36815118 ~ 36959996 (-) False XLOC_036604
TCONS_00072498 lncRNA downstream 178293 36794501 ~ 36798705 (-) True XLOC_036605
TCONS_00071483 lncRNA downstream 435142 36528233 ~ 36541856 (-) False XLOC_036601
TCONS_00071484 lncRNA downstream 435516 36533560 ~ 36541482 (-) True XLOC_036601
TCONS_00071499 lncRNA upstream 261779 37239785 ~ 37241323 (-) False XLOC_036610
TCONS_00072503 lncRNA upstream 261779 37239785 ~ 37242444 (-) False XLOC_036610
TCONS_00071500 lncRNA upstream 262363 37240369 ~ 37242444 (-) False XLOC_036610
TCONS_00071502 lncRNA upstream 270510 37248516 ~ 37249771 (-) True XLOC_036610
TCONS_00072072 lncRNA upstream 988142 37966148 ~ 37966860 (-) True XLOC_036614
TCONS_00071487 mRNA downstream 358925 36591791 ~ 36618073 (-) True XLOC_036603
TCONS_00071485 mRNA downstream 422266 36541949 ~ 36554732 (-) False XLOC_036602
TCONS_00071486 mRNA downstream 422323 36543255 ~ 36554675 (-) True XLOC_036602
TCONS_00071482 mRNA downstream 501670 36472444 ~ 36475328 (-) True XLOC_036600
TCONS_00071481 mRNA downstream 507881 36466771 ~ 36469117 (-) True XLOC_036599
TCONS_00071490 mRNA upstream 52968 37030974 ~ 37043900 (-) True XLOC_036607
TCONS_00071491 mRNA upstream 68004 37046010 ~ 37056622 (-) False XLOC_036608
TCONS_00071492 mRNA upstream 68983 37046989 ~ 37056211 (-) True XLOC_036608
TCONS_00071493 mRNA upstream 80893 37058899 ~ 37101581 (-) False XLOC_036609
TCONS_00071494 mRNA upstream 81745 37059751 ~ 37105226 (-) True XLOC_036609
TCONS_00071489 other downstream 8268 36893633 ~ 36968730 (-) True XLOC_036604
TCONS_00071488 other downstream 161776 36815070 ~ 36815222 (-) False XLOC_036604
TCONS_00071467 other downstream 1600641 35376243 ~ 35376357 (-) True XLOC_036587
TCONS_00071453 other downstream 3052487 33906377 ~ 33924511 (-) False XLOC_036577
TCONS_00071452 other downstream 3058421 33906377 ~ 33918577 (-) False XLOC_036577
TCONS_00071508 other upstream 478509 37456515 ~ 37457198 (-) True XLOC_036613
TCONS_00071526 other upstream 1646149 38624155 ~ 38631651 (-) True XLOC_036624
TCONS_00071541 other upstream 2862291 39840297 ~ 39847614 (-) False XLOC_036638
TCONS_00071545 other upstream 2886834 39864840 ~ 39864958 (-) True XLOC_036640
TCONS_00071554 other upstream 3129879 40107885 ~ 40109971 (-) False XLOC_036645