RNA id: XM_039797577.1


Basic Information

Item Value
RNA id XM_039797577.1
length 8685
RNA type mRNA
GC content 0.51
exon number 15
gene id LOC120557338
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 7728149 ~ 7751120 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGCGCTGTAGACACATTGGGCGTATCATCTAAACCGTCAGCCATCTGCCGCAGTCAGTCAGTTAGCTAGCTCCAGCGggaatggaaaatggaggactgACCGACATGCGAGGGCAAATCGTTGGTATTTCTAGCGTGTAGGTTTTGGAGAAGGGAATACAGAGCAGAAAGAACAGTTTCAAACCGAAAGCGAGAATGTGGCCGAAGAGACACTAGAGGAGCCAGATACATCTTCCAAGGCCAACAGTGAAGTTAAAAAGACTTGGAGTTTTCGACGGTCCACTGTTGCAAAGAGAGAGATGCCAGTGGAGGCAGCAACCGACAGTCCTGATAACCGCTGTCCTGTGCGTCGCAGTGGCAGGCAATCTAAGCGTACTGACAAACTAGAAGAATTCCTCTTGACTGCCAAAAGAGGGTCAAGAAAGAGCGCCCCACCTAGTCTGGAAAGTGGCGATCCTCCTTCCCAAACCCCAACTGATGAGACTGCCTCAGAGGCCAGCTTTGATGGTAACGCCGACACCAAGGCCGTGGAGGACAAGGTCGAGTCCCCGGAGAGAAGGACTAGAAGTGGTGCAAGGAAACCGACCCAAAGGAAAAGTCGAGGTGGCCGACAGGCTCGAGGACGCGGTGGTGTGACAGTTAAAGATGAGGGAAGCTCTGAGAACGAGGAGGACAGCAGAGACGCTGCCAAGAAGGACCAGTTACCGGATAAAAATGAGGAGAAAAAAGATGAAGAGAGTTATCCCCGTCCTGAAGATGTAGCTTGCACTAATACAGTACAGCCTCAGCCAGAGCAGGACTCGGAGAGGAAAGAAGTTCTTGATGAGAAGAATAAACATGGAGATGAAAATGACAAGGTGGAATCGGAGAAGGAGACTGAAGAGACTGACGAGGACAGCACAGAGTCAGACAAGCCTGCAGCAATGTTGGTAAAACGTGGACCAATAAGAACATACATCAATAAAAAGAGGGCAGCCAGTAAGAACACTACCCCTGTTAAAGGTCCTGCTCCTGCCAACAAGATCACTACTGTCAAGAGGGAGGCCAAACCTAAAGCTACCCAAGGTTCTGGAATGACACACAAGGCTCAGACACAAGTGGACAATGATGATGAGAATGACTCTTCAATGTCTTCgtcttcatcatcatcctccATTGATTCTGACGAGGGCGGTTATGATCCCAATGCACTTTACTGCATCTGTCgccagaaacacaacaaaagGTTCATGATCTGTTGTGACCGCTGCGAGGAGTGGTTCCATGGAGACTGCGTGGGCATCACTGAGGCCCGCGGGCGCCTGATGGAGAGAAATGGGGAAGACTACATCTGCCCCAATTGCACCGCTAAGAAAAATCAGGTCGTCAGACCTGCTACATCTATTCTCGCTACAAGTACAGATATTGGGAAGCCCAGGGCTCCGGCTTCTGCTCTCGCTTTTTCTGCGACCTCTGAAGAGAAAACTAACACCAGTGGGGTTAACGCTGTCACGGCACTTCCATCCGCTGGAACCGAAGAGAAGGGGGCAGAGGACATGGGCATCAAAGGCAGGATAGAGAAAGCTACAAATCCAACTGGGAAAAAGAAGATAAAGATCTTTCAGCCGGCCATACAGCAGCCAGCCCAACCAAAAGCAGGCCCAAAATCGGCACCAACCATGGAAAAGAAGGCAGTACCCACAGCAGAGCAGAAAGCACTACCAGACGCAGAGCAGAAAGTGGCTTCAAACGTGGAGGTGAAAACAACCGCAACAgtggaggtgccagaggagaaGGCCGGGCCAAAGGCTGAGGAAGAGTCTTCCCTTCCCAAATGTATCGGGCCTGGCTGTGAAAATAATGCCCAGCCAGATTCTGTGTACTGTGGCAACGACTGTATTCTGGAACATGCTGCTGCGGCCATGAAGTCCATCACTGATGTTAAAGATCCCAAGCAGAAGGACAAGGCAAAGGCCCAAAAAACCAAGTCTACACCAAAGAGGAACATGGCTGGTGGGAAAAGGAAGCCAAATAATACCCGGGAGGAGTCGGACAGCGAAGAAGACCATAGTGCTGAtctggatgatgatgatgaggacgACGAAGATGAGCATGCTGAGGAACACCCGCCCCCGCCGGCCACTGCATCCTGGTCCAGCGACCATAATTACATTGCAGTAACACCAGAAAAGACTACACCCATATCACCAACAGTGTTAAACAAAAAGTCTCCCCCTAAAGAAGAGAAGCCGAGTGAGAAGAAAGCGAAGGAACCACCCGTGGCTCCTGAGAAACCTTCTCGAGCTACCGCAACACCAGTCAAAGGAAACAAGAAGTCCCCAGCTACTAAAGCGGCCAAGGTTTCCCCGAAGGGCAAGAAGCCTTCTCTTCAGGCTACCAGCTCAAAGGCATCCAAGAAACCTGCGACGCCTCCGAGTAAAACTGCAGCAAAGTCCAAGAAACCAGGTTCGACGCCCGTCCATACCCCGTCCCGCTTCCCTCCAGGTCCGATCCACGTCACAGGAGCACTGAGAGTCACCAAGTCCAACTTTACCATTCCTAAGAAGCAGCCACAACAGAAGGATGCTCCATCCCATAGCAACTTATCCTCATCCTCCAGAGTGCCGTCATCTCCAGTTTCTTCAGCTCCCTCCAGCCACTCCTTATCCTCCAGACCTCCACATCCAGCTGCTTCAGCGCCCCCTATGTCCCCCATGTCGCCGCCCCCCAACAACCAGATGAGAACGAACATTCGCCGCTCGTTGACGGACATCCTCTATAAGAGGGTGAGCGACAGTGATGATCTGAAAATGACTGAGAGTGAGGTGGCAAGGCTGGCAGTTGCCATCGAAAAGGAAATGTTCAACCTCTGCCTTAGCACTGACAGCAAGTACAAGAACAAATACAGGTCCCTTATGTTCAACCTGAAGGATCCCAAAAACAAAGGCTTGTTCTACAGGGTGGTGGGTGGTGAGGTTAGTCCCTTCAGACTGGTGAGACTAAGTGCTGAAGAGTTGCTTTCCAAAGAGATATCGGAGTGGAAGAAGCCCATTGCTCCTGAGGCCCAGACTCCCAGTGCAAGGGTCCTTTCGGAGCATTCCAAACTAGGCAGCAGGCATGACTCTGGCTTACATAGCATGGATATGGAGGATGCTCCGCCAACATCCGATACAGATGTATGTATCTCTGCCACCACTTCGTCTACTCGCATGGCTTCTGCTGCAGACCAAGATGAGTCTAGTGCTACTCCTTCAGTTTCGGCTCAGCCCTCTGCTGTGGAGGGGAACAGTGGCAGCAGCATGCCAGACATTTTTAGTACCATGCTCAAAGACACAACTTCTGAACACAGGACTCATCTATTTGACCTCAACTGTAAAATATGCACAGGTCAGAAGACAGAAGACGAGCCTGCAGCTAAGAGAGCCAAACTGACCAAGAAGCCTGAAACTGTCTCCCCTGTCAGCCAAACACAGGACCCCACAGCTTACCAGCACCAAGACCCCTTAGCCTACAAACACGCAATGCCTCCATCCTACCAGTCTAACGTGGAGTCAGCTGTCCCAGAATCACAGCCACAGCTGGAACTCAATATTCTGGCACCTCCAGCCCAGGCCCCAGCACCTATCACTCCCACTGTATCCTCTGTCAGCATCACCCGCAGAGACCCACGCATGGCCAGGCACAGCTCCAGTGTGACTGTCACCTACACTGCTCCAGAAAAACCCATCAGCAACCCAGCAGAAACACTCCCAGCTCCTGTTAGTGCTCCAGTAGACATTGCACCCAAAGCACCACTGCCGATGCCCCCAGCTCCACCATCTGCAGTAGCCACGTCCAAACCAGTGAAAACAAGTACATCCGAGCCTCCTCCTGAGGGTGAGACTGCTATCTTTCTCCATGGTCAAGAGAAGATTTGGAAAGGATTTATCAACATGCAGGCTGTGGCCAAGTTTGTGACCAAGGCTTATTTGGTGTCAGGATCCTTTGAACACCTCAAGGAGGATTTGCCAGACACCATTCATGTTGGAGGACGGATATCTCCAAACACTGTGTGGGACTACGTCGGGAAACTGAAAACCTCGCTTTCCAAGGAACTGTGTCTGATCCGTTTCCACCCAgccacagaggaagaggaggtggcatatgtctctctcttttcttactTTAGCAGCAGGGAACGATTTGGTGTGGTGGCTAACAACAACCGTCGTATCAAAGACCTCTATCTCATCCCACTGGGCTCAAAGGACCCATTACCCTCCAAACTTTTACCGTTTGATGGGCCAGGTCTTGAACCAGTTCGTCCCAACCTCCTCTTGGGGCTGCTGATCTGCCAGAAGGACAGAAAGCGTACTGGTGCGCCGTTGGAATCTGAGGAAAAACGGTCCAAGACTCAAACCAAAGATGTTGATGACACTGGCCTTCCAAAGCCATCTCCTTCAGTCAGAGCAGAAAGAGTCACACGACAGAGTCTTGAAATCCCCTTCAGTACGACTCCTCCTGGGTCACCTCCGCCCAACTCCTCTGAGACCTCAAGCAGCACTGTGGCGCCCTCCTCAGTCCTTTCCTTCTTGTCCTCTGTTAAAGCCACATCCACTACCACTGGCAAGGACTCCCCATCCTCCTCTAGCTCTGTTGCTTCCTCTGCAGCAGCTGCCACTCCTCTTCAGACCATCCTCAACACTCTTTTTGGGAAGAAAAAGCATGATTCAGAAGCTTCCAACTCTCCGTCTGATCAGGGTGGAGAACTACTCGTCCCGCCCGCTACAATGCTAGACCCCATTGTGCAGCAGTTTGCACAGAGCTCTAAAGAGAAACTGGTGGAGGAGGATGATGACCGACCGTATGATCCAGAAGAAGAGTATGACCCCAGTAGGGGCTATAATGTGCCTAAGAAGCCTGTAGAGGTAGTAAGCAAACCTGAAATCTCTAAGCAGCCTGAGGTGGTTGCGAATGAAGGTGATGATGTAGCGTATGACCCAGAGGATGACTCAATTTTTGAAGAGGTCAAAACTGTAGTACCAGGTAAAGCTAAGGTTCCAAATGAATCTGTAACTGATCCACAAAAGATCCCGGAGAGCCTTAAACAGATTGGGGATCAGACATTCCAGAAAAAGGGAGAGCAGCAAATGTCATCTACAGGGACGCTTGGTGCCTCATTGACACTTTCAGACACACTCTTAACTCAACCTGCCAAATCCCTTTTGGGCAACAGTCAGCTACTGCAGCTTGGCAAAAAGGTTGAGGAACTAGTGAAGTCCTCGACGGTTGCTCCCTTGATCAACCAGAAGAGAGATCCCCGACAGAGCAGAGATCCTCGCCAGGCTGCGGCTGGCAGGAAGCTGACTGATGATCCCGAGGAGCAAGAGGAGACATCTGCTCTGTTGGAGGATTCTACTCCTTCCTCACAACCTGTGGTTCAAGAGCCTCAGCTGTCTAATGTAACTGAACTCCCAGACTCCTCACAAGGCTCAGAGACATCAATGCCTCATAATGAAGTGAAAAGCGAAACGCTGCCCTTCATGCAGTCAGACGAGGCAGATGTAGCAATTCCTTTATTAGGAGAGGAGGTGGAACCTGATATGGAGTTCAACTACATGGATGAGAAAGAAGTGAAAACTGAGGAAGCTGAGCCAATCAAGGCGGAAACTGAGATGGACAAGTACAGTATTTGGCCAAATGCTGCCAGTATTTTAAAAGCTGGTGAGGACCCTGAGTATGAGGAGAATAGCCAAGATGCACCAACCACAAGTTATTTTAAAGAGCCTGCAAACACCTCCACAATAACGTCGACAATCCCAGTACTCACTCAGAGCACAACAAAGGTTGACACTCAGTCCCATCACATGCCGCATTACATGTCAACACCAGGCTTTGACAGCGAGTACAGACCACCAGCAGACATAACCCCACCATCCAACTTCCCTCCGCCCCATCGGATGCAGGGACAAAGCCTGATAATGAGGCCTCCGCCGATGTCTATGCCACCACCCATGCAGGGTCTTCCTCCAATGTCAGGTCCTCCTATGCAGGGACCCCCTCCACCCATCCATGTTCCTCTCCCTGTACGTGGTCCTCTCCCCATGCAGAGTGACAACAGCCAGCAATATGGTCCTCCTCCGACGGCATACCCTCCCTATCAGAACCAGTGGCCAAGCCCCCAGCCACTGCAGCAGCAGGTCCCTCCTGGACCACCTCCCCAGAATATAATGCCACCCAGAGGACCACCACCATCATTCCCTCCAATGGCCCAGAGAGGCCCTGCTCCTCAAATGTTTGATCCCTCCATTCCCCCACAGCACATTGGACAGCAAGGTCACCCTACAGGCCTTCCCCCACCTCCTACTTTTGATGGACAGAACAGTTTACCTCCACCAAGATTCACTGGTCTTCCACCACCATTTAATTTCCCTGCAAACAGAGGTCCTCCTCCGCCTTTTACGGGGCCACCTCCTGGTCACTTTGAAAACCGACTTCCTCCTCCGTCCCACTTCCCAGGGCCCAGGGTTCCCCTGCCGTCTCAGTTTGGTGACCATGGGGCTCAACCCCTGATGGTAGACCAACCTCGAGGCCCTGCAGAACATTATAACAAAGACAATTCCAATTCTTTCAAGCTAAATGTGGATCTCCATGTCTTTAAAGACAATCAGGGTCCCCCGCCAGGTCCAGCGTACCGGGGACCTCCACCTAACCAGTATGAGGACAGAAGAGGCCCACCTTCAAATAGCGAGATGAGTGGACAGCACTTCAATCCACATAACCAGTACGGGAGCTCCAGACCTCACTCCTCACCACCACATCGAGGATCTTTTGATGACAACCGAGGTCCTCCCCCTCAGGAGAATAGACCCCACCTTTTTCAGCATTTTGGAGGATCAGAGCGGTACCGCTTCGATAGGCACTCTGATGAGGCTAGACCGGTTCGCCACAGTGGGCCACTGCTGCCAACTCCTCCAGAGGCTCCCATAGGTCCTCCGAGTCGCATGGGAGCCCACAGTCCAGATATGCACCGGGACGACCACTGGCGTCGCCACTCTCCTgaaatgaggaggaggagcagcaccACCCGAGAGGACTCAGAACCCCGCAGTGGTGATTGCTTTAGTCGCTTTGAAGGAGGACAAAGAGAACCTGCTTCTGGTCCCTCACAACACtctgaagagagacagagggagctgTCCGAGGACCGCCGGAGGGAAAGAGAGCGGGAAGTCCCCCATGCCGGCAGGCCTTCATGGGACAGGGGCCAGGGCAAGCAGTGGAGCAGAGAGCGAGAGTGGGATAGAGCGAGAGAAAGGGACCACGATCCAGAGCGCAGCCGAGAAAGAGACCGCGATCCGGAGCGTACCCGAGAAAGAGACCGCGATCCGGAGCGTACCCGAGAAAGAGATCGCGAGCCGGAGCGTACCCGAGAAAGAGACCGCGATCCGGAGCGTGGCAGAGAAAGAGACCGCGATGCAGAGCGCGGTCGCGAAAGAGACCGCGATCCGGAGCGCGGTCGAGAAAGAGACCGCGATCCGGAGCGTGGACGAGAAAGAGACCGCGATCCGGAGAGTGGTCGAGAAAGAGACCGCGATCCTGAACATACCCGAGAAAAAGAGCACCACCCAGAGCGAGGCCGAGAAAGAGACCGCGATCCTGAACGTACCCGAGAAAGAGAACATGATCCGGAGCGTATCCGAGAAAGAGACCGcagcagagggagggagggcgaGAGGCACAGGGACACGGAGGGAGAGCGGCACAGGGATCAAGACACAGACAAGAGGAGAGAccgggagagagacagggaaaaAGACAAAGGCAGGGATTCTGACAAGAGGGACCACGACCGCGACAGGGGGAGAAACCGTGATCGAGAGCGCGAACGCGACCGAGAAAGGAGACGGGACAGATCCCGAAGTAGGGAACGAGACAGGGACAGAGAACGTGGGAAAGACCGGGGCAAAGACcgagacagggagagggaaagagataGAGACAAGGATCGTCGGGACAGGAGCAGAAGCAGAGAAAAGCGAGAGGAGAAAAAGGACAGTAAACATGATACACCCAAGGAGAGAGATATAACTGCAGACAAATGACAAGAACAGGTCCTAGTCTCTGTTTTGTTGACACTACATTACGATTTTGAGAGACACTTCAATCTTTCACCAGTTGAAATCCAGTTGTATCACTGTAAATGTAGATGAGCAGTATTTCGTTAAAATTTCCACAGTTGTGTTCGTACTAGAAAAAAAGTTTGACAATGTTTGTATTCTTTTTGTCACTTAAAGGTTTCTTACTTTGTTTTATcacatttgaaaaaacaaaactgaagtccATGTAGGTTGCTTGTGTAAAGATGTATTAGGTAGGGTACTGAGTTCTATTACATGTACCTATCTCCTGCCcaagcagttttttttaaagaaaacaataaTGTAACTGAGTCACACACCATTTTCAATATGTAAATATgaatgtatttgtgtatatacTGATGTTTTTAATCATACTTTTCTAAGTAGAGAAAATAAAAGCCATATATCTGAGATGGATAATGTGAAAGTTAAGGAAACACTGTTTACACACAAATGTGTGTTATGTACAGCAGCATTGACCTTAAAGACTCCAACTATCTACAGCATACATCCCATCAATGGTTGTCAATGAAATGTCCTGATTTTGTTTCAGCTCAACAAATTAAACCCATTTGATGACGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49116 lncRNA upstream 64275 7662944 ~ 7663874 (+) True G36638
TU49087 lncRNA upstream 181114 7543986 ~ 7547035 (+) False G36616
TU49086 lncRNA upstream 182099 7543986 ~ 7546050 (+) True G36616
TU49078 lncRNA upstream 195946 7531717 ~ 7532203 (+) True G36609
TU49073 lncRNA upstream 202186 7521180 ~ 7525963 (+) True G36604
TU49242 lncRNA downstream 393421 8144541 ~ 8146263 (+) True G36727
TU49243 lncRNA downstream 396807 8147927 ~ 8148229 (+) True G36728
TU49261 lncRNA downstream 473138 8224258 ~ 8224772 (+) True G36745
TU49270 lncRNA downstream 488343 8239463 ~ 8241892 (+) True G36754
TU49271 lncRNA downstream 488343 8239463 ~ 8244446 (+) False G36754
XM_039797581.1 mRNA upstream 831 7709967 ~ 7727318 (+) False zmynd8
XM_039797588.1 mRNA downstream 11768 7762888 ~ 7769742 (+) True LOC120557341
XM_039798604.1 mRNA downstream 134632 7885752 ~ 8116031 (+) True cdh4
XM_039798605.1 mRNA downstream 134632 7885752 ~ 8116031 (+) False cdh4
XM_039798063.1 mRNA downstream 389114 8140234 ~ 8142947 (+) True LOC120557574
XM_039796679.1 mRNA downstream 419562 8170682 ~ 8177048 (+) True LOC120556871
TU48863 other upstream 469199 7242209 ~ 7258950 (+) False G36458
TU48651 other upstream 1089762 6635302 ~ 6638387 (+) False setmar
TU48489 other upstream 1675380 6035100 ~ 6052769 (+) False rybpb
TU48469 other upstream 1803749 5920924 ~ 5924400 (+) True G36156
XR_005638978.1 other upstream 2793985 4911700 ~ 4934164 (+) False cdk5rap1
TU49260 other downstream 476642 8227762 ~ 8228720 (+) True G36744
unassigned_transcript_183 other downstream 865878 8616998 ~ 8617069 (+) True trnae-cuc_4
unassigned_transcript_186 other downstream 890910 8642030 ~ 8642101 (+) True trnae-cuc_5
unassigned_transcript_189 other downstream 959889 8711009 ~ 8711080 (+) True trnae-cuc_6
unassigned_transcript_190 other downstream 987847 8738967 ~ 8739038 (+) True trnae-cuc_7

Expression Profile