RNA id: XM_039798613.1


Basic Information

Item Value
RNA id XM_039798613.1
length 5230
RNA type mRNA
GC content 0.46
exon number 19
gene id sema3fb
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 6882145 ~ 6941612 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCCCTGCCTCCCTCCAGTCAGGAGCGCCCAACTTTCCTGAGGAGCACACGCTGCGTGCCTGGACCTCTCCACACCACAGGGACTTTGTTACCAACTGCTTTTTCCCACGAGATGTTGATTGTGCTCGTGCGACAATATCTCCTCGTCTCGCGGTCTCGCATAAGAttgaactaaaaaaaacaacatttttttgaaCTGCCTTTTTTTCTTATTGTGCGCTGACAACTCCCGGGGCCAATAACCACGCAGGTACAGACTGCCCTCCTGAGCAGGGACTGTACCGGGATTTTCTATTATTATTGATTTCAACTTGGAGACGAAAGTGACCGATCTGTTGGAATTGGTTTGTTCAATGACTTGCAAGGTTGGACCTGAAGTTACATTCGGAAAGCTGTAACAATAAGAGATTTATTTAAAGCGCTCTTTGTGCCGCTGGAGGTTGGTCGACCATGCAGCTGGACGGTCTGTGGACGGTCCACGCCCTCCTGGCACTGTCCAGCTTGGCTCTCGGGAACCCAGTGAGCAATGAGCCATTGGCCGCGCCCCGCGTCTTCATCTCCTTCAAAGAGCTAAGATCCACCGGTACTGCTCATCACTTTGCCTACCTCCTCAACACGTCTGACTACCGGATCCTGCGTATGGATGAGGACCATGACCGCATGTACGTTGGCAGCAAGGACCACATCCTGTCCCTGGACCTCCATGACATCAACAAGGACCCACATATTATCCACTGGCCGGTGTCCGAACGAAGAAGGATGGAGTGCCTTGTGAGTGGGAAGGACGCCAATGAGGAATGTGCAAACTTCATCCGTCTGGTCGAGCCATGGAACCGGACTCAGCTGTACGTCTGTGGAACAGGAGCTTACAATCCAGTCTGTACCTTTGTCAACCGCGGGCGCAAACCTCAGACGTCCATGTATCTGCAGATGGCCCAGGCCAGAGGAAGGGCTAGCCGCGCAGCTGAACCCAGCGCGGTGCACGAGACACTTGGACTAAAGGAAGAAATCTTCCATTTGGAGCCAGGCAAAGTGGAATCTGGGAAGGGAAAGTGCTCCTACGACCCGAATCTCAACAGCGTGTCAGCTTTGATCAatggTGAACTGTATGCTGGGGTCTATGTTGACTTCATGGGAACAGACTCTGCCATTTTCCGTACTTTGGGGACAAAGACTGCCATGCGCACAGATCAGTACAACTCCAGATGGTTAAATGACCCCACTTTCATCCACGTACAACTCATCCCCGACAGCGCAGAGAGAAATGACGACAAGCTGTATTTCTTCTTCCGGGAGAAGTCCTCTGAGATGGGTCATAGTCCTGTGACCCAGTCTCGCATAGGACGCATCTGCCTGAATGATGACGGAGGCCACTGCTGTCTGGTTAACAAGTGGAGCACCTTCCTGAAGGCCAGGCTCATCTGCTCTGTGCCAGGGGCCGACGGCATGGAGACGCATTTTGACGAGCTCCGAGATGTTTACATACAGCCAACACAGGACACAAAAAATCCTGTCATATATGGCGTCTTCTCTGTCTCTGGCTCTGTCTTCAAAGGCTCAGCAGTTTGTGTTTACTCCATGGCTGACATCCGCATGGTCTTCAATGGACCCTTCGCCCACAAAGAGGGTCCCAATTACCAGTGGGTGGCCTACACTGGGAAGATCCCCTACCCTCGACCCGGCACGTGCCCTGGAGGTACGTTCACCCCCAACATGAAGTCCACTAAGGACTATCCAGATGAAGTGATTAACTTCATGAGGAATCACCCTGCCATGTACAATGCCGTGTACCCAATACACAAGCGCCCCCTGGTGGTTCGAACCAATGTGGACTATGAGTTTACCACCATCACTGTGGACCAGGTGACAGCTGCAGATGGCAACTATGAAGTGCTCTTTCTAGGAACTGACAAGGGAACAGTTCAGAAAGTCATCGTTCTGCCCAGAGATGACCTGCAGACTGAGGAGCTGGTCCTTGAGGAGGTAGAGGTTTTCAAGGTCCCTACTCCAATTACAACAATGAAGATCTCATCCAAAAGAcAACAGCTGTATGTGTCATCAGTGTTAGGGCTGACCCAGCTGGCTCTTCACCGGTGTGATGTGTACGGCGAGGCTTGTGCTGACTGCTGTCTGGCCAGAGACCCTTACTGTGCCTGGGATGGCAAGTCCTGCTCCCGTTACTCCGCCTCGCAGAAAAGACGTAGCCGGAGGCAGGACGTCAAGTACGGCAACCCCATCCGCCAATGCCGAGGCTTTAACTCTAACGCCAATAAGAACACTCTGGAGATGGTGCAGTATGGGGTGGAGGGAAGTAGTACCTTCCTGGAGTGCCAGGCACGCTCTCCACATGCTGTCATCAAATGGCATCTGCAGAGAGATAACAGTGACCGCAGGAAAGAGATGCGTTCTGATGGTCGGATTTTGAAGACAGAGCAAGGTCTACTCCTGCGGTCTCTGCAGCCCTCTGACTCCGGCATGTACCAATGTACGGCCACGGAGAAGAACTTCAAACACATGCTGGTCAAGCTGCAGTTGGTGGTGCTGTCGAGCCGGGCCGTCAACAACGTGCTGGTGGAGGGCGGAGGAGGGCTGGTGCCGTCTTCTCTTCACTCCGGCAGCACCCAGTGGACCCCCAGCGCAGGCCAGTACAAGGACCTGCTGACCATCCTGAGCCAGCCAGAGATGAGCCTGATCAATCAGTACTGCCAGGACTACTGGCAGTTCGGAGACCCGCTGCTGGGTGCCCTCAAGGCCAAAGACCTGAAGGAGCTCAAGGAGCAGAAGAAGCCCCGCAACCGTCGGCATCATGGGGAGGgggaaggggagggggaggagaaaTATGAGCAGGAGGAGCAGGATGAGGAGGCAGAGACATGAGGAGCCCAGCTTTGTGTTCTAAAACACCCTCAACCACCCTTTCTCCCACCCTGTGAAAACTGGGAGAGACTCATTGAGAGTAGCAACATGAAAAATCCACaaaccaagaaaaaaaaagaaaaaactgagaaaaaaagaggcttaCAAACAAAACCCCACATACACCCTCTCAAACAGTAAGATATATGATACACAGTATTTATTGTAGGTTGTATATAGTATCATTCTGTGGATTTCTTTGTActtatagaaaaaaaacatgctctttGTGTATAGGTACCTTTGGGGCaaatattattgttattaatgaTGTTGTTAATTTTATTGTTGCAGTTACTGTCATTACAAAACTTATCTGTCAGCATCAGATGACCTCGGCGACTGGTTGGAATGTGTTATCAGGCATGTAAGCTGTTAAGAGCGAGCTTTGAAAAGCTCTAACGGGGAAATGAGTTGTTGATAAGGGGTGAtgggatctctgttttttttcatgcttgCTTTGACGCGATGCCAGGACTCTTTTATTTCTGGACACACCAGGAACTCCTGTGGTGCAACCCCCCCATGGCTGCATGCGGACAGAGACTTAATATTGCCAGGGGACCATCGACACATGGTCCCAGTGATTGTGGGGAAACAATCCTTTTTTCATGGAAACCCAGACGTACAGATGACTGTTCAAATATTTTCACTGGTGTAATTGGGCCTTTTAATAGGAAACCGGTGCTTGCCACCTTTCTATTTCCTTCCTGATTGGAGGATTGATTGTAAAACGATGCGGCATCTTTGCTACTTCTCAGCCCAGATACTAATTCTGAGTATTTCAATCTCAATTGTACTCTACTTTGAGTAACCTGCAGCTTTTTCTGGCCATGACGTTTAAATACATAGATGACATAcacatagataaaaaaaaaaagcaagtaaTCAGATCAGTTTTGAATAAATCTATATCTAAATATAGTGGCTGGGTTATTTTCAAATGCAGACCTCCTTTGAACTGAGATTGAGGTGCAATAAAGGGTCAAGGTTTTGCACGAAGGGCATTATTCTTTTACTTTCACGGGACATTGGCCGGGGCCAAATGCAACAAGCACACGGGCAAGTTATAGTTgacttctgtaaaaaaaaactaattcaatTCAAGACGAAAGAGGTGCCCAGATCAGGCAGCAGTTGTAAGCTCTGAGCACTCGAGACATCTTTTGTTCTTCCTTTGACATTcatgtgtggaaaaaaaaaaaagattgcccATATACACAACAGAGCATTGTAACAATGTTGTGACACTAACCAAAATATTGGGAAGCTGGCTTTCATTATGTGCATGAACctgtatttgtactgtaattctGATACTGTGTggtcgtttttatttttttatttttttcatctctAGGGGTGTACAGTATGGTCTCTGAGGGACGCTCTCGTTACAGGGAAACGGGGAAAACAAATGCCCCTTTTTTCAAATATACCCTGTTTAAAGCATGATGCATCTTTTCATTGACATTTATTTAGACTTTGGCAGAGTATTAAGTGAAATTATCTcacgtactgtatgtgtttggaTAGCACATAAATAGGGAAAGTATCACACAACGGCGAATCCATTATGCAGATAAAGGCAGTTTGGTTTAGATGAGAGGGTTGTTGTTAAAATGTGAATGATAGTTGTATTGATTCAAATTTTTTGCTCTATTAAAAACTTAGTACAGCTGTTCTCCAGCAAGTGAAAAATAATGacgtataaaatataaaatatttgacAGGGAAGAAAAACATATCTGGAACAAGGTGCAAATTAATTTTCATAACATTCTGACATTTCAAGGCTTTTAATACACCCTGTCTACCTTGTATTGAGACTGTCTTGAATGCCTCTGGGAAGATGCATCCATAATTCATACAGAGGTATCTGTATCTGCTCCTCAATTTGGGATGTCTGTCTGCATTCCCAGAATCAATTACAGCTCCAGATTGTCTCCTCCAAACGAGACCGGGGGTTATACAgcaaaaaaatgcaaagaaaggTTGTACAATTTGTTGGTATTTTTAAAAACGTGTCTGTAGTTTTtgagtgtttttgtttgttttgtatttttgcatcatcagactttatggaaaaaaagaaaaaaactaaatgcacaAAGGTGATGTTCTTGTAATGACTTGTGTAAATTACTCTATCTTCCCTTTCCATTGTTGTTGCTGACTAATAAATTAAAGCTCTATATTTTATAAGAATGGAATGCTCCCACCCTTCATTGTGATTGGCTTGATACTGGATGTTTTCCATGTTCTGCCCAGAACCCTCTGGATCCTTGGAATAAAGTTGTACCTGTTAAAGAGA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48723 lncRNA upstream 108975 6772736 ~ 6773170 (+) True G36353
TU48649 lncRNA upstream 300842 6578980 ~ 6581303 (+) True LOC120556885
XR_005638905.1 lncRNA upstream 300997 6578980 ~ 6581148 (+) False LOC120556885
TU48648 lncRNA upstream 307798 6574146 ~ 6574347 (+) True G36299
TU48637 lncRNA upstream 338071 6543467 ~ 6544074 (+) True G36288
TU48740 lncRNA downstream 6467 6948079 ~ 6951049 (+) True G36368
TU48741 lncRNA downstream 11840 6953452 ~ 6953907 (+) True G36369
TU48742 lncRNA downstream 13921 6955533 ~ 6955855 (+) True G36370
TU48783 lncRNA downstream 172837 7114449 ~ 7117220 (+) True G36408
TU48784 lncRNA downstream 178284 7119896 ~ 7121438 (+) True G36409
XM_039798415.1 mRNA upstream 95878 6775726 ~ 6786267 (+) True arl8bb
XM_039796293.1 mRNA upstream 111870 6767012 ~ 6770275 (+) True LOC120556653
XM_039798871.1 mRNA upstream 121663 6756944 ~ 6760482 (+) True bhlhe40
XM_039796677.1 mRNA upstream 128515 6648315 ~ 6753630 (+) False itpr1b
XM_039797831.1 mRNA downstream 140653 7082265 ~ 7090752 (+) False LOC120557474
XM_039797830.1 mRNA downstream 140653 7082265 ~ 7089109 (+) True LOC120557474
XM_039797955.1 mRNA downstream 241587 7183199 ~ 7185639 (+) False si:dkey-245f22.3
XM_039797957.1 mRNA downstream 241587 7183199 ~ 7185639 (+) False si:dkey-245f22.3
XM_039797595.1 mRNA downstream 347295 7288907 ~ 7306343 (+) True hcfc1a
TU48651 other upstream 243758 6635302 ~ 6638387 (+) False setmar
TU48489 other upstream 829376 6035100 ~ 6052769 (+) False rybpb
TU48469 other upstream 957745 5920924 ~ 5924400 (+) True G36156
XR_005638977.1 other upstream 1947981 4911700 ~ 4934164 (+) True cdk5rap1
TU48863 other downstream 300597 7242209 ~ 7258950 (+) False G36458
TU49260 other downstream 1286150 8227762 ~ 8228720 (+) True G36744
unassigned_transcript_183 other downstream 1675386 8616998 ~ 8617069 (+) True trnae-cuc_4
unassigned_transcript_186 other downstream 1700418 8642030 ~ 8642101 (+) True trnae-cuc_5
unassigned_transcript_189 other downstream 1769397 8711009 ~ 8711080 (+) True trnae-cuc_6

Expression Profile