RNA id: TU91762


Basic Information

Item Value
RNA id TU91762
length 2288
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G68605
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 42998610 ~ 43010624 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atatatatatatatatatgatatgatatgatatgatagttgaataaaaacaaaagaccCTAAAATGACAGTCGGctcaaaattaaatgaattattaaaaatgtaataacaataacttaaaacaataacttatttcaccagtaaattactgttaaacgacaaaaacaaccactgaatgggaaaagggtattttacaacaacttcgaatgcagcacaaggctggcgaggcgaatttcaagtgaacgcaacatctgtgttgtttttccagacAACGGCACGGCAGCTATAGCTAGGCTCTTCAGACACACTTTAACAACGTTAAGCTGTCAgtattttaaccgtgtttactccattgacatatataaaatatatatagctatatgctccagctgctagctaacgctaggctaacgttacctgctgttgagtgtagtgttaactagctaacgctaggctaatgttacctgctgttttgtgtagtgttaactagctaacgctaggctaatgttacctgctgttgagtgtagtgttaactagctaacgctaggctaacgttacctgctgttgagtgtagtgttaactagctaacgctaggctaatgttacctgctgttttgtgtagtgttaactagctaacgctaggctaacgttacctgctgttgagtgtagtgttaactagctaacgctaggctaatgttacctgctgttgagtgtagtgttaactagctaacgctaggctaatgttacctgctgttgagtgtagtgttaactagctaacgctaggctaatgttacctgctgttgagtgtagtgttaactagctaacgctaggctaacgttacctgctgttgagtgtagtgttaactagctaacgctaggctaatgttacctgctgttttgtgtagtgttaactagctaacgctaggctaacgttacctgctgttgagtgtagtgttagCTAGCGTCCCGtgtggcgatgtttcagttccctctaacgtccgtcttcggagcatcagagagaagagcagtAATCTAAGTGGcccctaaataaggcaccggaATCAgagttgctattcggtccggtagataacggctGTTAAGACACGGTACCGTATTAGCACCAGGTCTCGccagtggcggatctagaacattttacatgggGTGGCAAAGGGGGGACAAGAGGTCTTGGCAGGGTGGCAGGGGTAGACGGTACGGGGGAATCCCTATATGTGAATGGTTTAAACCAAACATACactaaaatacttttaaatactTTTCAGAGCCATATTCCTCAGCCACTAACTAAACCAATTCTTCCTTTAAGAAGTCATTGATGATGGGTCTAAAGCTTGTATAGCTCTCATTATCTGGCTGCTAGAGAATGAAAAGCACCTGTCCAGCTCACTGATCATTGAGTCTATGATGGGAATGAATATACCTATTCTAAACATGGCCATAGCCAATGCATATAAGTGACATTACATATTATCCTACTGTACGGCAATTTATatggaagaagaataaaaacataccatatggtccaggggtaGCTGCaggcctcttcctccctgtcatcttcatctgcctcctcctgatcactccctgtctctgtccctctctctgaatctggaGCCTCCTCTTCATTCCTCACtgattcttctttttcctcatgTCCTTCACTTatttcctcttctccttctgtggtcttctcctgctctcaCCCTCcatggtctctccagtttactgccttctccttcATTTCCCTCATTCTCTTCATCCTGTGTACTTCTTTGAATTTTCTTAGCAAAAAGCTGGCAGTAGCCCACCTTTAGCCTTCCTTTTCATGTTTGGGCTCCAGCTACTTTCTtcagctactctggcctgcagAAGTCAATATGTGAAAACCTCTGGTTATcctgtattacattacactgtagggccctaaTAAGTAGcttataacaaatataaaatcaaaaaatatgtatcacatgcacacaacagttatgtttagactaggCTACTTAATCCTATTGTATTTGTTATTTCCCCAGTTGTAAGCTGGTTTCATTAGTGCAGCCTTATTGCtgtgatatgtgagaggaagtggattttatcAGACTGCTTAGCTagtcaaataaaaatgatgatCTCCTAACTGGcactgtattgtgtgttgtaacgtaacgtCAGCGAAACAGCGACCATCAGTTATGGATACAAAcaagattttatattttatattaagccGTTACtgtctttactaaaatcaaaactATGTGCTCTTACAAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91752 lncRNA upstream 43 42964987 ~ 42998567 (+) True G68598
TU91736 lncRNA upstream 56494 42941917 ~ 42942116 (+) True G68595
TU91735 lncRNA upstream 56911 42941492 ~ 42941699 (+) True G68594
XR_005639460.1 lncRNA upstream 146802 42849746 ~ 42851808 (+) True LOC120560254
TU91684 lncRNA upstream 196767 42794620 ~ 42801843 (+) True G68552
TU91777 lncRNA downstream 10338 43020962 ~ 43022839 (+) True G68613
TU91789 lncRNA downstream 16044 43026668 ~ 43029668 (+) True G68624
TU91790 lncRNA downstream 17993 43028617 ~ 43030425 (+) False G68625
TU91793 lncRNA downstream 17993 43028617 ~ 43030425 (+) True G68625
TU91791 lncRNA downstream 19230 43029854 ~ 43030425 (+) False G68625
XM_039804066.1 mRNA upstream 227 42993923 ~ 42998383 (+) False LOC120561116
XM_039802507.1 mRNA upstream 342676 42644746 ~ 42655934 (+) True LOC120560229
XM_039802449.1 mRNA upstream 355549 42550273 ~ 42643061 (+) False LOC120560195
XM_039802505.1 mRNA downstream 14641 43025265 ~ 43038474 (+) True entr1
XM_039802506.1 mRNA downstream 14643 43025267 ~ 43038473 (+) False entr1
XM_039804072.1 mRNA downstream 372993 43383617 ~ 43403660 (+) False fhip2b
XM_039804073.1 mRNA downstream 422146 43432770 ~ 43452377 (+) True LOC120561123
XM_039804074.1 mRNA downstream 721818 43732442 ~ 43767127 (+) True LOC120561126
TU91748 other upstream 348 42976146 ~ 42998262 (+) True LOC120561116
TU91740 other upstream 348 42993778 ~ 42998262 (+) False LOC120561116
TU91750 other upstream 32990 42964040 ~ 42965620 (+) False G68598
TU91611 other upstream 601967 42322473 ~ 42396643 (+) True G68504
TU91472 other upstream 992649 41909824 ~ 42005961 (+) True G68429
TU91783 other downstream 14674 43025298 ~ 43031225 (+) False entr1
TU91794 other downstream 25713 43036337 ~ 43162404 (+) True G68626
TU92811 other downstream 240063 43250687 ~ 43251323 (+) True G69274
TU93030 other downstream 799001 43809625 ~ 43810963 (+) True G69431

Expression Profile