RNA id: XR_005639460.1


Basic Information

Item Value
RNA id XR_005639460.1
length 189
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC120560254
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 42849746 ~ 42851808 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAGCCTGATCAACAAGTGAAAAGAGTCAGATAAGAGGAAAGAGTTTGAAAACTGATTTGACGACCACTGCTGAATTGGCCTGCTAAGAGGAAGAGGCACTAATGATTCCAGAAGAGGAAGCCAAAGAAGAAGACCTACACAGACTTTGAAATGGaTCTCTCAATTGCCATGATGACCAAGATATTCAA

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91684 lncRNA upstream 47903 42794620 ~ 42801843 (+) True G68552
TU91690 lncRNA upstream 63108 42716044 ~ 42786638 (+) True G68555
TU91683 lncRNA upstream 75254 42727020 ~ 42774492 (+) False G68552
TU91671 lncRNA upstream 150847 42682294 ~ 42698899 (+) False G68544
TU91670 lncRNA upstream 150847 42696160 ~ 42698899 (+) True G68544
TU91735 lncRNA downstream 89684 42941492 ~ 42941699 (+) True G68594
TU91736 lncRNA downstream 90109 42941917 ~ 42942116 (+) True G68595
TU91754 lncRNA downstream 112486 42964294 ~ 43023819 (+) False G68598
TU91752 lncRNA downstream 113179 42964987 ~ 42998567 (+) True G68598
TU91760 lncRNA downstream 145195 42997003 ~ 43013072 (+) True G68604
XM_039802507.1 mRNA upstream 193812 42644746 ~ 42655934 (+) True LOC120560229
XM_039802449.1 mRNA upstream 206685 42550273 ~ 42643061 (+) False LOC120560195
XM_039804066.1 mRNA downstream 142115 42993923 ~ 42998383 (+) False LOC120561116
XM_039802505.1 mRNA downstream 173457 43025265 ~ 43038474 (+) True entr1
XM_039802506.1 mRNA downstream 173459 43025267 ~ 43038473 (+) False entr1
XM_039804072.1 mRNA downstream 531809 43383617 ~ 43403660 (+) False fhip2b
XM_039804073.1 mRNA downstream 580962 43432770 ~ 43452377 (+) True LOC120561123
TU91611 other upstream 453103 42322473 ~ 42396643 (+) True G68504
TU91472 other upstream 843785 41909824 ~ 42005961 (+) True G68429
TU91474 other upstream 915430 41932563 ~ 41934316 (+) False LOC120561105
TU91478 other upstream 915430 41932563 ~ 41934316 (+) False LOC120561105
TU91431 other upstream 1093618 41721013 ~ 41756128 (+) False aebp1b
TU91750 other downstream 112232 42964040 ~ 42965620 (+) False G68598
TU91748 other downstream 124338 42976146 ~ 42998262 (+) True LOC120561116
TU91740 other downstream 141970 42993778 ~ 42998262 (+) False LOC120561116
TU91783 other downstream 173490 43025298 ~ 43031225 (+) False entr1
TU91794 other downstream 184529 43036337 ~ 43162404 (+) True G68626

Expression Profile