RNA id: XM_039802449.1


Basic Information

Item Value
RNA id XM_039802449.1
length 4399
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC120560195
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 42550273 ~ 42643061 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACATGCCAGTTCTAACCTCTGTGGTATCAGAAGCAAACAGTGACCACCAGCTCCTCTCTCCCAACTCTCATGAAGCTGAGAGCCAAGATCAGAAAGGAGGCAAGCATGGAGACTCAGGATCAACTAGAAATGCAGAGCCAGAACCAAAGAAGAAACGACGCAAGAGCAGAAGTCACAGCAACAACGTAGACAACACTAACGTGTCAGAGATTCACCCTAAAACTCAAACAGAGCTCCCACAGCAACATGTCtgtaaggaggaggaggttctCTCTGACCAGCAGCTCTGTATTCAGGAGAGGAACTCCAGTCTGGACCAAGAGGACCCAGAGCCTCCACAGATTAAAGAGGACCAGGAGGAGCTGTGcaccagtcaggagggagagcagcttgtaCTGAAGCAGGAGACTGATACCTTTATGTTGACTCCTACTTATGAGGAAAGGGACCACAGTGAAGGTCAGACTCTGAACTTCAATCCTGATGATGACACTCTACGTGCAGCAGAGAAAGAGTCTGTAGCCAACATGCCAGTTCTAACCTCTGTGGTATCAGAAGCAAACAGTGACCACCAGCTCCTCTCTCCCAACTCTCATGAAGCTGAGAGCCAAGATCAGAAAGGAGGCAAGCATGGAGACTCAGGATCAACTAGAAATGCAGAGCCAGGACCAAAGAAGAGACGACGCAAGAGCAGAAGTCACAGCAACAACGTAGACAACACTAACGAGTCAGAGATTCACCCTAATACTCAAACAGAGCTCCCACAGCAACGTGTCtgtaaggaggaggaggttctCTCTGACCAGCAGCTCTGTATTCAGGAGAGGAACTCCAGTCTGGACCAAGAGGACCCAGAGCCTCCACAGATTAAAGAGGACCAGGAGGAACTGTGcaccagtcaggagggagagcagcttgtaCTGAAGCAGGAGACTGATACCTTTATGTTGACTCCTACTTATGAGGAAAGGGACCACAGTGAAGGTCAGACTCTGAACTTCAATCCTGATGATGACACTCTAAGTGCAGCAGAGAAAGAGTCTGTAGCCAACATGCCAGTTATAACCTCTGTGGTATCAGAAGCAAACAGTGACCACCAGCTCCTCTCTCACAACTCTCATGAAGCTGAGAGCCAAGATCAGAAAGGAGGCAAGCATGGAGACTCAGGATCAACTAGAAATACAGAGCCAGAACCAAAGAAGAGACGACGCAAGAGCAGAAGTCACACTAACAACGTAGACAACACTAACATGTCAGCGATTCACACTAATACTCAAACAGAGCTCCCACAGCAACATGTCtgtaaggaggaggaggttctCTCTGACCAGCAGCTCTGTATTCAGGAGAGGAATTCCAGTCTGGACCAAGAGGACCCAGAGCCTCCACAGATTAAAgatgaacaggaggaactgtgcaccagtcaggagggagagcagcttgtaCTGAAGCAGGAGACTGATACCTTTATGTTGACTCCTACTTATGAGGAAAGGGACCACAGTGAAGGTCAGACACTGAACTTCAATCCTGATGATGACACTCTAAGTGCAGCAGAGAAAGAGTCTGTAGCCAACATGCCAGTTCTAACCTCTGTGGAATCAGAAGCAAACAGTGACCACCAGCTCCTCTCTCCCAACTCTCATGAAGCTGAGAGCCAAGATCAGAAAGGAGGCAAGCATGGAGACTCAGGATCAACTAGAAATGCAGAGCCAGAACCAAAGAAGAGACGACTCAAGAGCAGAAGTCACAGCAACAACGTAGACAACACTAACGTGTCAGAGATTCACCCTAATACTCAAACAGAGCTCCCACAGCAACATGTCtgtaaggaggaggaggttctCTCTGACCAGCAGCTCAACATGCCAGTTATAACCTCTGTGGAATCAGAAGCAAACGGTGATCACCAGCTCCTCTCTCACAACTCGCATGAAGCTGAGAGCCAAGATCAGAAAGGAGGCAAGCATAGAGACTCAGGATCAACTAGAAATGCAGAGCCAGAACCAAAGAAGAGACGACGCAAGAGCAGAAGTCACAGCAACAACGTAGACAACACTAACGTGTCAGAGATTCACCGTAATACTCAAACAGAGCTCCCACAGCAACATGTCtgtaaggaggaggaggttctCTCTGACCAGCAGCTCTGTATTCAGGAGAGGAACTCCAGTCTGGACCAAGAGGACCCAGAGCCTCCACAGATTACAGAGGACCAGGAGGAACTGTGcaccagtcaggagggagagcagcttgtaCTGAAGCAGGAGACTGATACCTTTATGTTGACTCCTACTTATGAGGAAAGGGACCACAGTGAAGGTCAGACTCTGAACTTCAATCCTGATGATGACACTCTAAGTGCAGCAGAGAAAGAGTCTGTAGCCAACATGCCAGTTATAACCTCTGTGGTATCAGAAGCAAACAGTGACCACCAGCTCCTCTCAATCAACTCTCATGAAGCTGAGAGCCAAGATCAGAAAGGAGGCAAGCATGGAGACTCAGGACCAACTAGAAATACAGAGCCAGAACCAAAGAAGAGACGACGCAAGAGCAGAAGTCACAGCAACCATTTGAACAACACTACCTTGTCAGGGATTCACCGTAATACTCAAACAGCTGACACATGTGGGAAAAACGTAATGTATGGTTCAGCATTTCAGAGACACCTGAGAGTCCACATAGCTAAGAAGCCATATTACTGCAAATCATGTGGAAAAGATTTTGTAAGTAAAACTCACCTGAAAATCCACATGAAAACTCACACAGGTCATAAGCCGCACATTTGCAGGACTTGTAGGAAATTATTATGTAGTCGCTCAACACTAAAAAGGCAtttgagaatccacacaggtgagaagccatATTCTTGCAAAACATGTGGGAAAGATTTCAAACGTAATGAGGGCCTAAGAGACCATATGAGaacccacacaggtgagaagccatatttatgcaaaacatgtggaaaAGATTTCCGACAAAATAGTGCTTTGTTGGtccacatgagaatccacaccgGTGAGAAGCCGTACATTTGCAAGATCTGTGAGAAAGGATTTTTTGATGTTTCAACATTAAAAAGGCATATTAGAACCCATACACGTGAGAAGCCCTATACTTGTAAAACGTGTGGAAAAGATTTCAGACAAAGTAGTGCCTTGTTGGTCCACGTAAGaacacacacaggtgagaagccttATGTATGCAAGACATGTGGAAAAGACTTTAAACAAAGCTGTGCCTTGTTGGTCCACATTAGAACCCACACCGGTGAGAAGCCATATTCTTGCAAAAGATGTGGAAAAGATTTTGGACAAAATAGTGGCTTGTTGGtgcacatgagaactcacacaggtgagaagccgtTCATTTGCAAAATCTGCAGGGTTAGCTTCTGTGATGCTTCAGGTTTAATAAAGCATATGCGAACCCACAGAGGATAAAATCTAagccaaaatgcttatgttaGCAATAGTTAGCTTGTTCTGGTTTTCTAACTGCATGGCAAGTTATAGGAGCTAAGCTGGGAGCTtaatggagacagctaaagttaatgggttagctgccctacagctgtcagaggtAGCTTCAAtttcatatattaccttctaacagctgtattTTCAGTAATGTGACAATCagtgacagcaccgtttggcttagttattTATGCAGTTGGCATCATTTGTTACTTACCTAGTTTATGAcgaatcatttcagctgtgctttctaacatgatgtcattgtgctaaccgtgcaccgttagcctttacaacagagccgcttcactacacttgttagataatggTTCATtccagagttctctgttgatttgtgtttgtcgctgtgtgcgtagtggaaaatgaatgtaaacaaagttgcgTGCAGGTCCCCTCAAGACCAGGCTGATgttagaagtccctctagtggacagactgtgtaacaacaacaaccacatgcttgtaGTGGCATTGCGttagcctgagtagtgtagtacatattatttaacaggctgcatttgagcattaaatatttgaatattataatatatataaaaatatcaaaTGGAATTCGAATGATATTATAGAGAAAGATTGATAGCTCTAATACATACTGATCCCCacttgtgtgaatgtttatctaaTGCGCAGGTACAAATGTGTGTCAAAAACCACAAGACCTCCTTTTTAACTGTATTGGATtgaattttaaaagtagcctaagaTAAACAAAGTTTATAGGCTGTACTACACTACAAAACCACAATGCTCCAGGGTAtctattattgtattatttgtgtacttCTTAATGTCTTCTGTTTGCTGGTGTTGCGTGCCCATATGTGTTGACGGGTCACATTTCCCCATTGGCGACAATAAAGTATTTATCAAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91636 lncRNA upstream 13627 42535267 ~ 42536646 (+) True G68512
TU91637 lncRNA upstream 14145 42535267 ~ 42536128 (+) False G68512
TU91622 lncRNA upstream 58020 42355497 ~ 42492253 (+) True G68507
TU91621 lncRNA upstream 153871 42385954 ~ 42396402 (+) True G68506
TU91598 lncRNA upstream 218627 42278980 ~ 42331646 (+) True G68495
TU91663 lncRNA downstream 795 42643856 ~ 42644077 (+) True G68537
TU91671 lncRNA downstream 39233 42682294 ~ 42698899 (+) False G68544
TU91670 lncRNA downstream 53099 42696160 ~ 42698899 (+) True G68544
TU91690 lncRNA downstream 72983 42716044 ~ 42786638 (+) True G68555
TU91683 lncRNA downstream 83959 42727020 ~ 42774492 (+) False G68552
XM_039802452.1 mRNA upstream 15395 42495285 ~ 42534878 (+) True ccdc180
XM_039802454.1 mRNA upstream 15395 42495285 ~ 42534878 (+) False ccdc180
XM_039802453.1 mRNA upstream 15396 42495285 ~ 42534877 (+) False ccdc180
XM_039802455.1 mRNA upstream 15396 42495285 ~ 42534877 (+) False ccdc180
XM_039802474.1 mRNA upstream 60011 42450281 ~ 42490262 (+) True LOC120560205
XM_039802507.1 mRNA downstream 1685 42644746 ~ 42655934 (+) True LOC120560229
XM_039804066.1 mRNA downstream 350862 42993923 ~ 42998383 (+) False LOC120561116
XM_039802505.1 mRNA downstream 382204 43025265 ~ 43038474 (+) True entr1
XM_039802506.1 mRNA downstream 382206 43025267 ~ 43038473 (+) False entr1
XM_039804072.1 mRNA downstream 740556 43383617 ~ 43403660 (+) False fhip2b
TU91611 other upstream 153630 42322473 ~ 42396643 (+) True G68504
TU91472 other upstream 544312 41909824 ~ 42005961 (+) True G68429
TU91474 other upstream 615957 41932563 ~ 41934316 (+) False LOC120561105
TU91478 other upstream 615957 41932563 ~ 41934316 (+) False LOC120561105
TU91431 other upstream 794145 41721013 ~ 41756128 (+) False aebp1b
TU91750 other downstream 320979 42964040 ~ 42965620 (+) False G68598
TU91748 other downstream 333085 42976146 ~ 42998262 (+) True LOC120561116
TU91740 other downstream 350717 42993778 ~ 42998262 (+) False LOC120561116
TU91783 other downstream 382237 43025298 ~ 43031225 (+) False entr1
TU91794 other downstream 393276 43036337 ~ 43162404 (+) True G68626

Expression Profile