Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00007261 |
| length | 454 |
| RNA type | mRNA |
| GC content | 0.68 |
| exon number | 3 |
| gene id | XLOC_003768 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 45436703 ~ 45465268 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007264 | small GTPase mediated signal transduction | biological_process |
| GO:0000786 | nucleosome | cellular_component |
| GO:0005085 | guanyl-nucleotide exchange factor activity | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0046982 | protein heterodimerization activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-070209-128 | Predicted to enable DNA binding activity; guanyl-nucleotide exchange factor activity; and protein heterodimerization activity. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be part of nucleosome. Human ortholog(s) of this gene implicated in Noonan syndrome; Noonan syndrome 4; and gingival fibromatosis. Orthologous to human SOS1 (SOS Ras/Rac guanine nucleotide exchange factor 1). |
| ensembl_id | ENSDART00000172826 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00007258 | lncRNA | upstream | 5460 | 45454556 ~ 45456610 (+) | False | XLOC_003768 |
| TCONS_00008719 | lncRNA | upstream | 48273 | 45412823 ~ 45413797 (+) | True | XLOC_003766 |
| TCONS_00007252 | lncRNA | upstream | 66778 | 45393067 ~ 45395292 (+) | True | XLOC_003764 |
| TCONS_00007246 | lncRNA | upstream | 70279 | 45388194 ~ 45391791 (+) | False | XLOC_003764 |
| TCONS_00007257 | mRNA | upstream | 8345 | 45448212 ~ 45453725 (+) | False | XLOC_003768 |
| TCONS_00007253 | mRNA | upstream | 36177 | 45421761 ~ 45425893 (+) | False | XLOC_003767 |
| TCONS_00007254 | mRNA | upstream | 36318 | 45422206 ~ 45425752 (+) | True | XLOC_003767 |
| TCONS_00007245 | mRNA | upstream | 61924 | 45388126 ~ 45400146 (+) | False | XLOC_003764 |
| TCONS_00007251 | other | upstream | 67290 | 45392211 ~ 45394780 (+) | False | XLOC_003764 |
| TCONS_00007247 | other | upstream | 68540 | 45388198 ~ 45393530 (+) | False | XLOC_003764 |
| TCONS_00007249 | other | upstream | 69407 | 45388210 ~ 45392663 (+) | False | XLOC_003764 |
| TCONS_00007223 | other | upstream | 610477 | 44851474 ~ 44851593 (+) | True | XLOC_003747 |
| TCONS_00007206 | other | upstream | 1126290 | 44335666 ~ 44335780 (+) | True | XLOC_003733 |
