RNA id: XM_026934151.2


Basic Information

Item Value
RNA id XM_026934151.2
length 8693
RNA type mRNA
GC content 0.49
exon number 41
gene id ralgapa2
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 14469694 ~ 14569098 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACGTCTGCGCGCTTCCGTGTTTACACCCCGCGGAGAGGCGGCCGCTGGAATAACACAAGTCAAACGTTCAGCAGCTGGGAGAGTGGCGGCATATAGGACACCGACTGAATGGTAAAAGGGCTTCAAAATTGACTTTCACAGCGGAATGTTTACTCGAAGGGGTTATGGAGACGTCAAGAAATCTACACAGAAAGTTCTGGACCCAAAGAAGGATGTTTTAACCCGCTTGAAGCATCTCCGGTCACTCTTAGATATTACTGAAAGACAAGAACTGAAGAGTTTTTTCGAGGCCAACTGCTCgcagatttattttatcttcTATGAAAATTTTGTTACACTGGAAAGTAACTTGAAACAAAAAGgGAACAAATCTCAACGGGAGGAGCTGGACTCCATCCTCTTTATTTTTGAAAAAATACTTCAACTGCTACCAGAGAAAATCAACAGTCGATGGCAGTTCCACAGTATAGGTTCTATTCTAAAGAAACTATTACACACTGCCAACTCTTTCAAGaTCCGCTGTGAGGGCATGCGGCTGTTCCTGCTCTGGCTACAGGCTCTGCAGACAAACTGCGCTGAAGAGCAGTTGCTCATCTTTGCTTGCCTGGTGCCCGGTTTCCCCGCAGTTCTCTCTTCCAGAGGTCCCTGCACACTAGACACCATCATCTACAGCCCCTTCTCCAATCCTCCTGATGCCAAGATCGTACCCGAGGAGATTACCCCTCTGGTGCCTGCTGTTCCTGGGGAGAAGGCTGTAGATGATCAGACTTGCTACATTCTTCAAACTGTACTGAAGTTTATGGTGGTCCAGGCATCCAGTCTGGAATGGCACAAGAAGGACAAACAGGACTCAGGCTTCAGGTTTCTCTTTGCCCTTTTTAAGAAGTACTACCTGCCACACCTCTTTCCTTCATTCACCAAGCTCACCAACCTCTATAAGCCATTGTTAGACCTCCCCCACCACCGACCGAAGCCTCTATATGTGCGGGTTTCACGCAACAGCGAGAGCACATTCTGCACACGTGATCAGTACCTAGCCCCCCGTGTAGCCTTCATCACCTGGCTGGTCAACTTCTTCCTGGAGAAGAAGTATGTGAGCTCAGCTACAACCAGCACTAAGAATGGAGGAGAAGTTCTTCCCAAGATCATCCAGACTGTAACTGCAGGCAGTAGCAGTCAGGAGAAGAGTAGCGAGTCGGAGCCCAATGGGCCGGCGGAGCAGGAGAAAAACCACTCGAACAGCAGCACACTGTCTGACCGCAGAGGCAGCAACTCCAGTCTGTGTAGCATTGAGGAGGAGCACCGCTCCGTTTACGACATGGTGCACTGCATTCTGCTCTCTACACGAGACAACGTCAACTTTGTCAACGAGGTTTTCCACCAGGCCTTCCTGCTGCCGTCCTGTGAGGCGTCAGCCACCCGTAAGGTGATTAAAGTGTACAGGAAATGGATTCTGCAGGATAGGCCCAACTTCATGACTGAGCCTGAAAAGACAGATCATGATGAGGAGACAGAGGCGGCACAGCAACCCATTGAGACTGACAGTACACACCACTCACAGGAGAGCCATGGGCACAAGAGATCATCCAGCTGGGGGCGAACTTACTCCTTCAGCAGTGCCATCAGCAGAGGGTGTCTGACTGAGGAACAGAACCATGATGTGAAAGCTGGCATTCAGCCTACCCTACAGGTTTTCCTGACAAACTCTTCTAACGTGTTCCTGTTGGAGCCTTGTCATGATGTGCCCAAACTGCTTGAGAACCAAGTGGAGGTGTGCAGGGCCGTGCTCAGTATCTACCGCCACATGATTATGGAGCACAGCATGAACCGACAGACCTGgGAACAGATGCTGCAAGTTCTGCTGAGAATCACTGAAGCAGTCATGAAGAGGTCACAGGATGACCAAAGAAAAGACGCTTTTGCCCAGAGCCTGGCTAGTGTCCTCTTCAGAACCATCATTGTAGCGTGGGTGCGAGCCAATCTCAGTGTGTTCATCTCTCGTGAGCTGTGGGACGACCTGCTGGCAGTGCTGTCCTCTCTCAGCCACTGGGAGGAGCTGGTGATCGAGTGGGCCAGCATCATGGACTCCCTGACCGTCGTGCTGGCCCGTTGCGTCTATGGCCTGGACCTCAACAACCTTCCACTTGACAAGCTCTctgagcaaaaagaaaagaaacagcggggccgaggAGTGATGCAGGATTCTCAGAAATCATCAGTGGTAGCGAGGTCATTCTCTCTGAGTTGGAGGAATGCAGGAGAGCAAGCTGGCGCTCAGGAGCCCATGCGCATCCGCAGTGCCACCACCACCGGAGCTCCTGCTGTGGAGAAGGCTCGCAATAACGTCCGACAGAAAGCATCAGCTAAGCGAAGCCAGTCTATCAGCAACTGTGTGCATCTGTATGAAGCTTTGCCGGCCACCAAGAGTGTGCCAATGCTGCTGCACACTGTCAGCTCTTTCTTGCCTGGTATCTCTCACAACTCTCATTGCTCTCACAGACTCTCAGATGTTGAAGAATGTCAGTTGTCTGAAtgtggaggagaaggagagatggGAGAGGGAGACAATCCCCTCCCTCGCAGCAGCAGCACCTCGGATATTACCCAGCAACTCACGGACTCCTTCCCagGTCAAAACAGGGAGGACTCTCCAAATGCAAGCTATTCTGATGGCAGATCCTGGGTATGTGACAACAGCTCAGTAGGCAAGAGGGAAACACCCACGATTCTGGTGCGGCGGAGCAGCAGTCCTGGAGATATTGACTACCCAGGAGAGACAGGGTCTGTGAATGCAAGGACAAAGATCCGGGAGAAAAGCGAGAGTGTGAGCAGCGAGACCTCAAACTCCTACCTGAATGACGCTGACGTAAATCTCCTGACGTGGCAAGCCGTGGAGGAGGAGCAAGACTCTTCCTCTGCCAATGACGTCAGTGTGAGCGTTAACATGGGAATGACCACTGATACAGAGAGCCAGAGGAGTCTACTGCTGAGTCAGAGTGAGGCACTGGCAGgTTCTGAGTGTGTCCACTCGCTCCACTCTGCCCCTCTGTCCCCATGTCCCCCCGTTTCTCCCACCCTGCTCCTGCCCCAGGGTTACAGTGACGGCCCTCAGCTCCTGGAGGACGCCATGCACATGCCTCATGACCTGGACAGCAGCGAGTTTCTGGCTGATGACATCAGCATCATCGCCGGTGGCTGTTTGACTGGCTGGCATGCTGACTCTGCCTTTGTACTCTGGAGGAGGATTCTGGGCATTCTGGGGGATGTTAACAACATCCGGTGCCCTCGAATCCATGCCAAAGTCTTCGGCTACCTGTATGAGCTCTGGCACAAGTTGGCCAAGATAAGAGATAACCTGGGGATCAATGTGGATAACCAGTCAGCTCTGCCCACAACACTGTTCATTCCTCCGCTTCGAATGTTAGCTTCCTGGCTTTTCAAGGCCACCATGCTGCCTGCAGAGTTTAAGAGTGGGAAACTGCAGGCTTATAGGCTGATCTGTGAGATGATGACTAAACATCAGGATGTGCCACCCAACAGTGACTTCCTGGTACATCTCTACCACGTCATGCACAAGGGCTTCACTAGTGATGATCAGGATGTGCTGAACACAATGATCAGGTGGTGCTCGCCACGATTCTTCTTCCTTGGCATGCCTGGCTTCACCATGTTGGTCGGGGACTTCATCACTGCTGCTGCTCGTGTCCTCAACTCGGACAACTCAGAGTCTCCAAGGATTGAAGCTCAAACAGTGCTCGGCTCTCTGGTATGCTTCCCCAACCTGTACCAGCAGATGCCTTCACTGCAGTCTGCACCAAAATCTCAGGATATTATGGTTGGCAAAGATGACTTGAAGgactaCCTTGTAAACATCCTGCTGAAGACGGCACGTAATGAGCCAAGTGAAGGAGCCAGgTGTGTTGCTATCTGCAGTCTGGGGCTCTGGGTGTGTGAGGAGCTGGGGCAACAGAAGATACACCATCAAGTAAATGATGCCATTAATGTGCTTGGTGTCACTTTAAAGTTTGGCAATAAGGTCGTGGCTCATGTAGCCTGCGACATCTTCCAGCTGTTGATCTGTCACTGGCAGCACCTGCAGAAACTGGAGCAGTCCCTTCCTAAAAGAATAATTGAAATCTTTGTAGCAACGATAGCATTCCTTCTGCCCAGTGCCGAGCACTCTACAGTCGAGGCAGATAAAAAGTTAATGGTATCCTTGCTGCTCTGCTTGCTTGACTGGTGCATGACCGTCCCTCTGTCCATCTTACTGGAGCCCATCACCATGCCTATGCTGGATGACCCTGCCTCTCACAAAACACCCCTGTTGGACTACATATACAGGGTGCTCCACTGTTGTGTATCCGGCTCTAACCTGCACACACAGCAGAGCCACTACCTCCTGAGTCTGGCAGATCTGTCTACAGACTATGACCCCTTCCTGACACTAGGCCAGGTCAAGAACTCTGAGCCACCACCTATGCACAACAGCACAGGGGAATTTGGCAACCTTCTCACAGTGGCTGAGGaaaagaaaagaaggaacaTGGAGTTGATTCCTCTGACAGCTAGAATGATAATGACGCACCTCGTCAACCATTTGGGCCACCAACCCCTCAGCGGCGGCCCTGCACTACTGCACAGCATGGTTAACGAAAACCATGACAACCCTTACGTGGAGTCGTCTGAACTGTCCTCAGAGGTCTTCAAGAGCCCCAACCTGCAGCTCTTTGTTTTCAACGAAAGCACACTCGTGTCTTACCTGCAGATTCCCTCTGATCCCATGTCTCTCTCTAGCACAAACTCCAAAGAGAACTCATCTGAGGTGCGAGTGATTGTGCGGGACATCTCTGGGAAGTACTCATGGGATGGCAGTGTTCTTTACAAGACTTTAGACAGGACGAACTTGCACTGTAGCAGCACTGGGGATGAGCCTTCACACCACCACACTAACTATTCATCCGCTTCCTCCAAGCAGACCTCATCTCATGCGAGTAGATGCTCATCAGAGCTGGAGGTTGAGGATAGTGTGGATGTGTTGGACCAGCTTCTGGAGGAATTGGGCCACAGCAGTCCTGAGTGCCTGCCTCAGCCTCAGCAGAGACTCACACAACCAGCTCCAGCACCCGTGGGTATGACCGCAGACATGGAGGGTGCCATCATGGAGGCCATTCACAGACAAGCAcagcaggaagaggaggagctcACCTGCAGACGAAATGAAGATCCGAGTGTGAAAGCTGCCAGTCAAAGAGAGCCCATTCACCAGGAGCCCAAAGCACCGTTCTATTTCTGCCGCCTTCTGCTCAATGAGCTTGGCATGAACTCCTGGGACCGCAGAAAAAGCTTTCATCTCCTGAAGAAGAACTCAAAGCTCTTAAGAGAACTGAAGAATTTGGATTCGAGGCAGTGTCGAGAGACACACAAAATTGCTGTGTTCTATATTGGTGAAGGCCAGGAGGATAAGTGCTCTATATTGTCCAATACTGAGGGCAGCCAAGCGTACGAGGACTTTGTCTCTGGACTTGGATGGGAGGTGGACCTGGCTACTCACTGTGGGTTCATGGGAGGTTTGCAGAGGAACGGCAGCACGGGAAACACTGCGCCGTACTACGCTACCTCAAACGTGGAGGTCATCTTTCACGTGTCCACTCGTATGCCCTCTGACTCAGATGACTCTATCACTAAAAAGCTTCGTCATCTGGGAAACGATGAAGTGCACATTGTGTGGTCAGAGCACACGCGGGACTACCGGCGGGGCATCATCCCTACTGACTTTGGAGACGTGCTCATCATCATCTACCCCATGAAGAACCACATGTTCTTTATTCAGATCATGAAGAAACCACAGGTCCCTTTCTTTGGCCCTCTGTTTGATGGAGCAATAGTTACAGGGACACTGCTGCCAAGTCTCGTACGGTCCACATGCATCAACGCCAGCAGAGCAGTGAAGTCTCGACTGACGCTCTACCAGAGCTTCTATGAGGAGCGGGCTCTCTATCTGGAGGCCATCATTCTGAACCACAAGGAAAACCTGACCTTTGAGGATTTTGCTGCCCAGGTCTTCTCACCCTCCCCCACCTACTACCCAATGAGTGGGACAGGCTCCCTCACTGGCAGCACGAGTGCTGAACTAAGTGTTACTGTGACGACCAGCGAGTCCACCGAGCAAGCTTCACCCACCATGCCACGCGCCTCCAAGAACCGGGTTTCAGGAAAACTCCGGCGCTCGGCCAGCGCCATCAGCAAGTCCTCTAACTGAGCTCCTCTTTTAACAAATAAGCACTCATCAACCCTCTTCAGACTGCGGAGAACTTaaaactgtgctgtgtgtgtgtgtgtgtgtgtgcgcgcatgtgtgtatgCCTGAGAGTAGTCTTCTTCTTGTCACTTCTAACTGGATTTTTTTGATTGTTTAGTTTCGGTAGCACTGGGAGATGAGACAATGTCACATTAGTGCAATGCTTCTCTAAGGTTGAGTTCTCACACCGAGTGGCATCTGTGTGTGGCGTCCCTTTTTTTGCTGGAGTAAGTGTAGACATCTATGAATGTTGACTCTAATGCACATAACGTAAACTTCCAAAAAGAGGTGTGTAACATCATTGCTCTGAAACATGTTGAACTGTGGAACATGAATATAGAAACAGATTTCTTCACTGACTCTAACATAGGCAACAAAGCTGCCTTTTCACAAAACTTCTGTGATGTCACCTTAGACAATACCATATGTGAATCTCCTTTACCCCGAAGCTCCTAATGTCTTAAACACTGAAAGGTTAAGAAATTACAAAGCCATTAAGAGGAGGGTAGTGAATGTGTGCAGACCACTTTTGTCTTTTGTGGTTCTCCACTGACCATTCACTCCTTttctttagaaagaaaaaagggacaTTGTCATAGGTGTTTAaaagcagtttgtcatgttaaagAGGTCCTTTATAAGAGCTACATCAAATTTTCATATCTCAAGTTTCAAACTTGCATTATTCTTTTGTGAAAATAGCCTACTTTATCAGAGTGGACAGCCTGTGTGGTCTTTTTAAGATGGGCTGACTTGGAAaggctgttttttgtttgtgctatcatttactttttaaattattggtATAACAGTTTTATGTCTGATTTATGTAATCATGCTGGTCTGCAACTATaattgtgtttgtatatgtgtatttgttCTAATGATTCTGTTCATAATCTATAAATTAAGTCCTGTTTTGGTCTTGTAATGCTACTATGACATTCCAATATTTCATACAGGGGTGTTATTGCACTCACATGtggtgtttctttctttctttctataattcttggatgtacatatttttgaatttttatttgctatgttttttgtttcatattgtatatacagcataatatCCTCCATCAGAATTATGCTCTGTTCCTGACCACATGCTAAATTGCCACCGGAGCCTCAGGTGAATCTTCACTCCAtgtactggtgtgtgtgtgtgagtgtgtgagtgcatgtgtgtgcatgtgtatgtgtgcatttgtgtgtgttgaggggTGGGATTCGGACAACTTTTGAAAGCTAACAGTGCCTGTGTAATACCTGTTCATATTTCTGCTCCCTACAAGCTGCGATCAGTCGCTCTTCCTCACCTCtctgttctgacaccttttGTCTTTCCTGTTTTGGAAGAAGTTGCTGAGTGTAACTCTTCTCTATAGCTGCAGAGCAGAGGGTTTCGGGGATAATCCCATACATTTCACTGCTTTGTAAGAGCTGCTTTCTTCTGATTGGCTTCTGAATGGCAGtcctcctccacctgctccaCTTCATTCCCCTGTGCCACTCTGAGTCGCCTTTACCATACCAGCAGGGAAATAGGACACATGGCAGCACCtctttctctcccacacacacacacactctttcctttctttctttccacacCCCCAAAaatcctccctctctctataGCAGGCGGCAACCTGGTGCTGCCAACTCCATGACACCTACCCTCTGTTCCCCTAGTGCCCTAGCCGAGTTGCCATGGAGGCCAGGTGTTACACACTCTGTAAGCCCCGCCCAAGCTGCAGCAGGACACATGCTGCACGACTTTGCCTTACCTGTACACCTTtctattgtgtttgtgttacccTCTTGtactgatactttttttttgtcctacaCGCACTGATAAGGAACATAGGAGATCTTTAATCTTGAATGAAGAATACTGAGGAATGTATACAAACCACAGCCCTATTCCAAGTCACAAACACAAACCCGGCCATTTGAAGTTTCTCTGAACTATGAGCGCTGCCTCGTGTGATCAGCCTTATAGTGCACACACTATTTCCTGTAGGTTGGTATGGTTACTATGTAGGTTTCACTGGTGTTTGGTTTTAAGGTGCTGATGTGGTTTGTGCCAGGGATCTGTCCTACTGCAACTGGCCTAATTTAAGTGAAGTGTCATCTGTGTTTATGCTACATTTAGTTGTTGTTCTTGTACATTGTGTCCTTTGTGAGGGCTCCAAATCCTGaaggatataaatatattaatgccTGTAATATAATCTTTGTAAAAgacattgaaaaaaaatcttgaagaTTTCATCATGACTTGTTAACATATCAGActgtttttaatggaaaaataatcattcTATCTTTACTAGGAAAGTGAAATCAGaacatttcattaaatcagAATGAGATTTa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195921 lncRNA downstream 57027 14408793 ~ 14412667 (-) True G165494
TU195859 lncRNA downstream 228691 14192997 ~ 14241003 (-) True G165452
TU195855 lncRNA downstream 276123 14190691 ~ 14193571 (-) False exd2
TU195858 lncRNA downstream 279209 14189892 ~ 14190485 (-) False G165451
TU195856 lncRNA downstream 279209 14190021 ~ 14190485 (-) False G165451
TU196048 lncRNA upstream 78101 14647199 ~ 14648296 (-) True G165581
TU196201 lncRNA upstream 290951 14860049 ~ 14860606 (-) True G165721
XR_003403867.2 lncRNA upstream 293056 14862154 ~ 14874192 (-) True LOC113538627
TU196200 lncRNA upstream 293088 14862186 ~ 14874133 (-) False LOC113538627
TU196384 lncRNA upstream 372603 14941701 ~ 14942043 (-) True G165856
XM_026933665.2 mRNA downstream 151580 14308595 ~ 14318114 (-) True LOC113538539
XM_026934014.2 mRNA downstream 163743 14291331 ~ 14305951 (-) False vps39
XM_026934013.2 mRNA downstream 163743 14291331 ~ 14305951 (-) True vps39
XM_026934552.2 mRNA downstream 184331 14254350 ~ 14285363 (-) True galnt16
XM_026933890.2 mRNA downstream 218894 14202819 ~ 14250800 (-) False numb
XM_034308239.1 mRNA upstream 128610 14697708 ~ 14702272 (-) False nkx2.4a
XM_026934323.2 mRNA upstream 128611 14697709 ~ 14702272 (-) True nkx2.4a
XM_026933666.2 mRNA upstream 158035 14727133 ~ 14772881 (-) False nkx2.2a
XM_034307754.1 mRNA upstream 158035 14727133 ~ 14772881 (-) True nkx2.2a
XM_026933667.2 mRNA upstream 158035 14727133 ~ 14750389 (-) False nkx2.2a
TU195857 other downstream 279209 14188238 ~ 14190485 (-) True G165451
trnal-uaa_1 other downstream 614002 13855610 ~ 13855692 (-) False trnal-uaa_1
TU194859 other downstream 1564111 12903788 ~ 12905583 (-) False timm9
XR_003403883.2 other downstream 1656030 12791829 ~ 12813664 (-) False fzd3b
trnal-cag_11 other downstream 2249022 12220590 ~ 12220672 (-) False trnal-cag_11
TU196126 other upstream 158106 14727204 ~ 14729021 (-) False nkx2.2a
TU196128 other upstream 158106 14727204 ~ 14733850 (-) False nkx2.2a
XR_004578922.1 other upstream 540496 15109594 ~ 15117364 (-) False capn3a
TU196803 other upstream 735525 15304623 ~ 15322004 (-) False pgfb
XR_003403862.2 other upstream 1065988 15635086 ~ 15663495 (-) False ktn1

Expression Profile