RNA id: TU242059


Basic Information

Item Value
RNA id TU242059
length 565
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G204362
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2770686 ~ 2771310 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATCCTGCATAACTGTACATAACACTGTACCTAACTCATCCTGCATAACTGTACATAACTCATCCTGCATAACTGTACATAACTCATCCTGCATAACTGTACATAACTCATCCTGCATAACTGTACCTAACTCATCCTGCATAACTGTACCTAACTCATCCTGCATAACTGTACATAACTCATCCTGCATAACTGTACATAACACTGAACATAACTCATCCTGCATAACTGTACATAACACTGAACATAACTCATCCTGCATAACTGTACTTAACCTGTCGAGAGCTGCATAACGGTACCTAACTCATCCTGCATAACTCATCCTGCATAACTGCACATAACTCATCCTGCATAACTGTACATAACACTGTACATAACTCATCCTGCATAACTGTACTTAACCTGTCGAGAGCTGCATAACTGCACATAACCCGCCTGCATTATTGTTTATAACCCATTCTAAGCCATATACCTGTTTATTATCTATCATTCATTACAGTACATAAGCCATCTACAGTTGTATAACTGTTTATAACCCATCCAGAGCTACCTACCTGTACATTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241998 lncRNA upstream 33400 2544989 ~ 2737286 (+) True G204323
TU241996 lncRNA upstream 33856 2544989 ~ 2736830 (+) False G204323
TU242026 lncRNA upstream 46877 2656576 ~ 2723809 (+) True G204333
TU242025 lncRNA upstream 46877 2656924 ~ 2723809 (+) False G204333
TU242020 lncRNA upstream 143537 2619027 ~ 2627149 (+) True G204330
TU242013 lncRNA downstream 130919 2902229 ~ 2902895 (+) False LOC113528221
TU242111 lncRNA downstream 262961 3034271 ~ 3036163 (+) True G204410
TU242118 lncRNA downstream 293595 3064905 ~ 3072726 (+) True G204417
XR_003402893.2 lncRNA downstream 421394 3192704 ~ 3200055 (+) True LOC113527909
TU242361 lncRNA downstream 444477 3215787 ~ 3218884 (+) True G204633
XM_034310177.1 mRNA upstream 78972 2622170 ~ 2691714 (+) True LOC117598986
XM_034309962.1 mRNA upstream 512430 2239609 ~ 2258256 (+) True nbr1b
XM_034309964.1 mRNA upstream 512430 2239609 ~ 2258256 (+) False nbr1b
XM_034309963.1 mRNA upstream 512430 2239610 ~ 2258256 (+) False nbr1b
XM_026917021.2 mRNA upstream 558275 2198749 ~ 2212411 (+) True slc25a39
XM_026916953.2 mRNA downstream 84086 2855396 ~ 2856253 (+) True hspb9
XM_034309777.1 mRNA downstream 96458 2867768 ~ 2908043 (+) True LOC113528221
XM_034310178.1 mRNA downstream 136862 2908172 ~ 2917545 (+) True LOC117598987
XM_034309769.1 mRNA downstream 142948 2914258 ~ 2983091 (+) True LOC117598765
XM_034309773.1 mRNA downstream 142948 2914258 ~ 2983091 (+) False LOC117598765
XR_004579364.1 other upstream 614837 2155599 ~ 2155849 (+) True LOC117598829
TU241504 other upstream 885208 1883075 ~ 1885478 (+) False ccndx
TU241220 other upstream 1179611 1561594 ~ 1591075 (+) False syt3
TU241205 other upstream 1414359 1353334 ~ 1356327 (+) False kmt5c
TU240880 other upstream 1534074 1220512 ~ 1236612 (+) False paqr4a
TU242114 other downstream 232362 3003672 ~ 3012859 (+) False pyya
TU242330 other downstream 421402 3192712 ~ 3200133 (+) False LOC113527909
TU242670 other downstream 1195448 3966758 ~ 3986284 (+) True limd2
TU242671 other downstream 1195448 3966758 ~ 3986284 (+) False limd2
TU242672 other downstream 1195448 3966758 ~ 3986284 (+) False limd2

Expression Profile