RNA id: TU242026


Basic Information

Item Value
RNA id TU242026
length 2265
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G204333
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2656576 ~ 2723809 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGCAGTCCGAGTCTCTCACCCAGCTCGATACACAGCAGCCCTTACACACCCTCGCCctgaatctctctttctctcactcacagacacacacacacacacacacacttatgttaAGCATGCTCGCCCTGAACCTGCTCCATGACTCAGGAACCACACACCTACATGTGCAGCCGAGTCAGAGAGCCTGGTTTCAAGACAATAATGTATAAAGTGGCTGATTGAGaagctcaacacacacacacacacacacacacacaggctgagcCTGAGTCACACTCGCATTACAAGCAAGGTGTGCGCTTCGGTGGAACTCCTGAGGTACCGATCTGATCTAAAGCAGCTTGCACGCTTGGTTAAAACCGATTCTGATCTAATACCAGATCGAGGATTCTAATCAGCAATGTGGAGAAGGACGTGAGTTTGTGGACGTGGTGCACACTCCGAGGAAACTTTCCTATTTCTGTATGTATTCTACAGTGACGTTTTGGATTCCTTCATCTGTAGATTTAATGAATGAGGAGACGGCAAACTAGAGACACAGGACGTCCGATGTCCAAAAGTCATCAGggacattttttgtgttttgtttgttttgttttcttacaaaagatatatgaatatatgagtATCTATATTGACAGAAAATGAGATGATTCAAAAGTTGTGTTGatgcaggaagaaaaaaaaccctctcacATTTACTCTTATTTGTCTCAAGAGTTGAATATAGTTCAGTTCTGCTCACTGTCTCACTTCACTGCAGAAGAAGATTGTGGAtgttatggtgatgttttcatGCCGTTCACTCAGACTCGGAACAAATCTCACTTTCACTAAGCACATCGGGGGGAAGGGGGGTGAAAAATTCAAACGTAGCTAAGCATGGAAAATTATTTAGCGAGTCATTAGTGGTTTGGCTCCGGTGATGATCAAACTGATTATTAAGGAAAATAGTTAATAGTGCATAGTGATGCAGAAAAAtctagatttaaaataaaacaggggtggacaaatcatacatttattagtAGTGTGTCTTCAGTCTCGTATTTTAGTTCCCCAGAAGCCTAACTGAGGCTGGGGTTCAAcagtggtagctaatgtaatatatcatcatatggctagctagttaaatgcaTTAACACAGACTAAGAGAAATGAACAAGTATGTAGCCATCTTTCATATCTTATcatgattacatttttgatCTAGTTTTTAATGAAGTtccaggctactgatttgtccacccctgatgAACAAAAGTATATTTGACCactggcaaaataaaaaaaaacaaacagttgaAGTAAAGAGACAAAATGTTTTAGTACAATTTCTGCATTTTACACATGAAGCATCCATATTTCATTATCTTTTACAGTGCAATCAAATCTGGAAGCCCCGTCAGCAGAGAGATTATTACACTGCCTCATTTACACAACCACAACACTGCCTCGGTTTTTCTTTATCATTCATCACCATCTACAACACCACTGCCTCTGTGAGACAATCACTTTTCCTGTAGCGTCCCAAGAATACTGCCTGTGTGGAACACACCGAGCACCGCTGGAGACCGGGATCGAATGTCACAAACATTGGAATTGCATCATGTCAGCAGCGAGTCTGTCACTGAAAGAgaattcagttcatttttccCAAGATGTTGCTGCAAATGAACACCAAACTGGCCTTTGAACTTCATCCACCGTGTCACAGACCCATCCAACCCGCTGATGCGCCATGGTCTTTACATGCTCACTACAAGCTCACAATGATCCGGTCCTGATCCCAGACTTTTACCCCTGAACTACCACCGCCAGGAGCATTTAAAAGCTACGACACACACCACTTCCCTCCAATCCAGCTTTCCACTGTAGACACGCGCTAACGAATCATCACTGTACCCGTGTGCAATAcctcttcagaaaaaaaatcaaatcaagaCGCTTGAAAGACTTCCACGTTTCACTTTGACTATGCACGCGACTTGCACAGAAACTCGCAATGTGTTCGGCTTCCTCTGAACTTCCTTTTCGTGTTTCGTGAATGTGAGCGTGATGATGTACGGACACTGCCGAAAAACTTTCACTGCCAACGAGCCACATCAATTCAGACGTCTTAAACCACATCAAAGTCACACGGCGTCCAGCACAAAGacattgttctgttctgttctgctcCAACACTTGTTACACATTCAAACGCACAAATATTGTTTCTCTTGTATCGTGAACTGGATGATGaaaataatctttattaaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242020 lncRNA upstream 29427 2619027 ~ 2627149 (+) True G204330
TU241988 lncRNA upstream 115118 2541114 ~ 2541458 (+) True G204316
XR_004579376.1 lncRNA upstream 131698 2523988 ~ 2524878 (+) True LOC117598836
TU241612 lncRNA upstream 264077 2388984 ~ 2392499 (+) True G203996
TU241581 lncRNA upstream 396202 2258482 ~ 2260374 (+) True G203967
TU242059 lncRNA downstream 46877 2770686 ~ 2771310 (+) True G204362
TU242013 lncRNA downstream 178420 2902229 ~ 2902895 (+) False LOC113528221
TU242111 lncRNA downstream 310462 3034271 ~ 3036163 (+) True G204410
TU242118 lncRNA downstream 341096 3064905 ~ 3072726 (+) True G204417
XR_003402893.2 lncRNA downstream 468895 3192704 ~ 3200055 (+) True LOC113527909
XM_034309962.1 mRNA upstream 398320 2239609 ~ 2258256 (+) True nbr1b
XM_034309964.1 mRNA upstream 398320 2239609 ~ 2258256 (+) False nbr1b
XM_034309963.1 mRNA upstream 398320 2239610 ~ 2258256 (+) False nbr1b
XM_026917021.2 mRNA upstream 444165 2198749 ~ 2212411 (+) True slc25a39
XM_026917270.2 mRNA upstream 461550 2187365 ~ 2195026 (+) True rpl27
XM_026916953.2 mRNA downstream 131587 2855396 ~ 2856253 (+) True hspb9
XM_034309777.1 mRNA downstream 143959 2867768 ~ 2908043 (+) True LOC113528221
XM_034310178.1 mRNA downstream 184363 2908172 ~ 2917545 (+) True LOC117598987
XM_034309769.1 mRNA downstream 190449 2914258 ~ 2983091 (+) True LOC117598765
XM_034309773.1 mRNA downstream 190449 2914258 ~ 2983091 (+) False LOC117598765
XR_004579364.1 other upstream 500727 2155599 ~ 2155849 (+) True LOC117598829
TU241504 other upstream 771098 1883075 ~ 1885478 (+) False ccndx
TU241220 other upstream 1065501 1561594 ~ 1591075 (+) False syt3
TU241205 other upstream 1300249 1353334 ~ 1356327 (+) False kmt5c
TU240880 other upstream 1419964 1220512 ~ 1236612 (+) False paqr4a
TU242114 other downstream 279863 3003672 ~ 3012859 (+) False pyya
TU242330 other downstream 468903 3192712 ~ 3200133 (+) False LOC113527909
TU242670 other downstream 1242949 3966758 ~ 3986284 (+) True limd2
TU242671 other downstream 1242949 3966758 ~ 3986284 (+) False limd2
TU242672 other downstream 1242949 3966758 ~ 3986284 (+) False limd2

Expression Profile