RNA id: TU242673


Basic Information

Item Value
RNA id TU242673
length 4305
RNA type TUCP
GC content 0.41
exon number 5
gene id limd2
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3966733 ~ 3986284 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAGGGTTCAGGAGGAGGAAGCAGTGGGGGGAAATCTGAGCACCTAAAGAGCttcagcagcaacaacaacaacaacatcaacatcatcaccatcatcatcatcatcatcatcgctgCTTCAGCTTTAGTCCACATTATAGGAACAGGCAAACGGGGAACAATTACAAAATCAGGTTTACCGACTGCACCGAGAGCTCCTGttgcatctttttttgtttttaagtgcaACAGCGATAAGGATATCCACAGATGgACAACCTAAGCCCCTCAGACGAGAAACCTGTCCAGCGctccaagtctttGAGCTTTAAGACGCAGAGAGAGACCTGCTCGTCCTGCGATAAGACTGTGTATCCGATGGAGAGACTGGTGGCCAACAATCTGATCTTCCATACAACATGCTTCTGCTGCAAGCACTGCAACACCAAGCTCAGTCTGGGCACGTATGCGGCACTGCAAGGCGAGTTTTACTGCAAACCGCACTTCCAGCAGCTGTTCAAAAGTAAAGGGAACTACGACGAGGGCTTCGGACGCAAGCAGCACAAAGAGCTTTGGGCCTCCAAAGATGCTGAGAGCATCACCAAATCACCGTGACAACCTCCCCATCCTCCTCTTCTACTGATCTCCAGCGCTTTCTCGCCCCTCACCTACTGAATCTGATTCGCTGTCTAAAACCTGCCTGCCctgccacacactcacacacatcagtacacACTCTCACATGCACAAACCACAAACACGATGCGGCAGGCATCTCACATCTCTTCTAGAGCAGTTTTAAAACTTCTGCCCTTTAGCTTTTagtaaatgattttaattttttattattattattattttttttcatccacaGTAATTAACTTGTGACCAAATCCCCACATCGAAAAGGGgagatttttgtgttttattttctttttcatttaaaaaataattatcttGCATCGTTTTATCATTCTTTTGTCAGGTACACATGCTGGCACGTGAAAGATCCTTTAACTGAACCACTTACACGAATACTAAGTTTCAGGATGTACACTCAGGTAGCGATTCTGGTGTGTGTGATCCTTTCCTTCTGTCTTTGACAAGCATTATGTcgattttgtttttgtaggaGAAAGTTAGGCGTCcacattgcctttttttttatatcagcagGGTATTATATCTGTGAAAGTACAGGGTATGCGGTACTGTATGCATCTCTGCTGAACATGGCTCAAAACGTTCACACACTCGTTTTCGTTGTCATATGCGCACATATTAAATAGAGAGAAACTATATTTActcttacagaaaaatataaaacctaGTGTGTAAATCTagtttcttgtcttttttttctggtttgttACAATAGAAGTCTTTaaagggtgctttcacacctattagtctgtTTTACGAAGTCTGAATCAATTCCAGTGAAATtggtatttttgttttgtttgctgtttggtttagTTTAGTGCAAGAAAAGACTTTGAGTGTTGTGTAGGGCTAAAACCCGAAATCGtaaaactcattcattcattggaCAGAACAATATGTAGATGATTAtataaaaaactattttatccagtgtttattttctttctttgtcagtCAGTCCAAATCTCTGGAACAGAACAGAGTGCTGTGATTTGGCTCACTTTGTGCCTCGTGGCTCAGTTTAacagctcacatctacaaaaaaactTCAGCAACCAAAAACGCACGGCATGTTTAATTACCTCGGTCGATACCGAGTCAagtcactttctctctgcaaTTGAACCAGCAGACTGAGCGTGATGACTGTTTTCACCTGCCTAAAAAAAGCCGCACTCAGagggagaacacaccagggttccattcaaacagactaaactgAAGCagatgtgaaagcacccttaggGACCTCTGTGTGGTTCACTTATTTCACTATAGCACTTGCTAATTCCTGCTCAGACATTTTAAAACCCAGGTTTCACTTGTGTTGTATTTACACAGCCAGGTTTCCTTACCTTATGACCGAATtcccaaaacataaaaaaacttgTTACTGAGCTTGTACTGTTTTTACTGCTTTTAGAGTTTCTGGTTTTAGTTCTCCTCTATTTTACTTAATAGGCATCTATCCAATCCAGCATTTgaaagttttaattttaatggtaatCTCTGCTCCAGTTTCCGCAGTCACTGATCGGTACATGACTTTACTTCAATACACGATGAATGTACTGTAGTTTGCTTAAGTGGACCAAAGCCACTGCACAGCGAGGGTTGTGTTATAGTTGCAGTGAATTTGGTCTTGTGCGAAACGGCGTTGCAGCGTGTCGCACCATTACCTTCCCCCCTCCGCCACTTCCTGTCGTCACATTGTTCTGTCTGCTTCCTGTGAGCTGCTTTGTGGCTTTGACTCGAGTCTTCTCTAGCATGAGCCATTGACTGCTCACCGTCGCTCAGGAATGTGCACGGGTCATAACAATCAGACTGTTTCATCCATCGTTCTCATCTCCATACTGTAACAAGAGCCACGTCAGCTCAGCCTTCCTTGGTGTGCTCAGGAGGCTGTATCCTATGATCTCTGTGTATATAACCTCGCAAACTCCTGTAATGTCATTTAGTCAGTTAAAATACCACCTTGTTTCACGAATGTGGCTGAAATGGAGAGGCTTATTTTTCTGAGGCTCAAATTATTtccagtgtttgtgttgtgaTTAAATTCACTGTCTGCAGTCCAGAGACTGGTACATTACAGGTGTTTACCAGTTAAACATTTAACCTTGCTATGTAAGTTTAGGTCTGCCAGCCCGAGGCACCTTTCCAACATAATACAATCACCAATAGCCACGTTAAAGGGAGTTTACAACATCTCCCACTACTATCTCGAGGTCAGGGTCTTGGCATTTGGAGGGAATTACTATCTTGTGTTCAGGGTTTTGGTGTATGGAGAGTTTGCAATATCTCCCAGTACTATCTTGTGTTCAGGGCCCAGTCATTTAGAGTTAATTTAGAACACCTCCCAGTACGATCTCATGTTCAGGGCCTTAACATTTGGAGGAAATTTACAGTATCTCCTAGTACTATCTTGTGTTCAGGGCCTTGACGTTTAGAGACAGTTTACATCTCCTAGTACTATCTTGTGTTCAGGGTCTTGGTGATTGGGGTAATTTGCAACATCTCCCAGTACTATCTTTTCTTCAGGGCTTTGTCATGTAGAGGGAATTTGCAATATCTCTCAGAACTAGCTCATGTTTATGGCCCTGATGTTTAAAGGGAATTTACGTCTCCCAATACAGGGCCCTGGCATAATAGTAGCAATGGCAGAAAGCCCCATCTGGTGGTGGGAGAGGACATGGCAAATCAGCTATAAGAACGAGTGAGTAGCTTTTCTATTTCAGTTTCTATCTGAATGTTTTGTCTGATCATCAGCTTTGATGTTTTGTAGTCAATCCTGTCATTATATTGCCcagtttttaattgtttttcttggAAAGTACCTACAAAGCCATTGAGAGGTTGAGCAAATGCCTCTTGCCACTGGAATTCCACAAAAACCCCTTTCTTGTCGCACATGTTTAAGATTACTGTGAAACTGAAGGCGCTGTGAGTTGTAAAATGTATCAAAAGCTCTTGCCATGAGGCAAAACAATATTTTCTTAAGTGTtaaaataagataataaaacCTGTATCAATTTCAAATCTTTACCCAAAGCTTCCTCCTTCGAGTGTTTAGATTTCTATCTGTGTTTTTGACAGGGCTATAAGGTACAAAACCACACAATATCAAAGTGTCTGTTTTACCTCTTTCTATTTTCAGTGACTATGGGAAATGGGGAGAAAGGGTACAAAATGTTGTCTTTTGCCTGATCGTAGTTGTGTCTGTGGATGTTACTTTAGATGTATGCCTTATTTAAAGTAgtactaaaaacattttaaatgtagatGATGGTCAGCATGTGTTGTGCGAGTGGAGATGTGTGTGAATACAAAATGGAGTATTCTGTGTCTTAACTTCATATGGGTGGACTGAACATGGTGGCCTTAAAATGGCAGGAAGTTAAgtttttggttttgattttttccccctttgcaTCTGTTATTCCCAAAGTGTCTGTTCAGGTCTTGATTCCTTCTTCACCTGCTTAACAGCACACACGTGAACTCCTCAGaaccttttttctttaaaaagcattttaaaatgcaattataaaCTGTGAGGTCTTACTTTTCCCCCTTTCTCCATTGTGCTGtgctccctttctttctctttttttaatttctcatttttgtacatgcttttgaagaaaataaaaagatgcTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242596 lncRNA upstream 83799 3853496 ~ 3882959 (+) True G204832
TU242626 lncRNA upstream 97015 3864913 ~ 3869743 (+) True G204860
XR_003402906.2 lncRNA upstream 98661 3856054 ~ 3868097 (+) True LOC113528035
XR_004579351.1 lncRNA upstream 100420 3856054 ~ 3866338 (+) False LOC113528035
TU242579 lncRNA upstream 180180 3776604 ~ 3786578 (+) True G204815
TU242706 lncRNA downstream 119659 4105943 ~ 4107728 (+) True G204912
TU242762 lncRNA downstream 205453 4191737 ~ 4192099 (+) True G204965
TU243084 lncRNA downstream 369255 4355539 ~ 4356186 (+) True G205242
TU243087 lncRNA downstream 370034 4356318 ~ 4356536 (+) True G205245
TU243092 lncRNA downstream 373121 4359405 ~ 4360374 (+) True G205250
XM_026916871.2 mRNA upstream 6120 3959057 ~ 3960638 (+) True LOC113528358
XM_034310237.1 mRNA upstream 15827 3948916 ~ 3950931 (+) True LOC113528362
XM_034310065.1 mRNA upstream 19213 3935421 ~ 3947545 (+) False ddx42
XM_026916864.2 mRNA downstream 4474 3990758 ~ 4019393 (+) True map3k3
XM_034310183.1 mRNA downstream 43525 4029809 ~ 4030450 (+) True LOC117598989
XM_026917237.2 mRNA downstream 48282 4034566 ~ 4044375 (+) True gfap
XM_026916773.2 mRNA downstream 71467 4057751 ~ 4104754 (+) True kcnh6a
XM_026916775.2 mRNA downstream 71467 4057751 ~ 4104754 (+) False kcnh6a
TU242330 other upstream 766625 3192712 ~ 3200133 (+) False LOC113527909
TU242114 other upstream 953899 3003672 ~ 3012859 (+) False pyya
XR_004579364.1 other upstream 1810909 2155599 ~ 2155849 (+) True LOC117598829
TU241504 other upstream 2081280 1883075 ~ 1885478 (+) False ccndx
TU241220 other upstream 2375683 1561594 ~ 1591075 (+) False syt3
XR_003402913.2 other downstream 726589 4712873 ~ 4721468 (+) True psmc3ip
XR_003402967.1 other downstream 1103914 5090198 ~ 5090283 (+) True LOC113528651
XR_003402964.1 other downstream 1104236 5090520 ~ 5090604 (+) True LOC113528648
XR_003402966.1 other downstream 1104548 5090832 ~ 5090916 (+) True LOC113528650
XR_003402965.1 other downstream 1104964 5091248 ~ 5091332 (+) True LOC113528649

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051570 True 866 mRNA 0.49 4 NC_007114.7 31850851 ~ 31875138 (-)
grasscarp (Ctenopharyngodon idella) TU312851 True 226 TUCP 0.38 1 CI01000069 3426149 ~ 3426374 (-)
eurasian perch (Perca fluviatilis) TU212731 True 3093 TUCP 0.39 4 NC_053126.1 21525442 ~ 21538072 (+)