RNA id: TU4436


Basic Information

Item Value
RNA id TU4436
length 1316
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G3730
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 6730782 ~ 6732117 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAAACGCAAAATAGAAAGTGCTAATGacatttgttattttgttcTTCATAAAAAATGATGCTTTTCTTCACATCATGTCAGCTTGAACAATTAAATTCTACAGTCTTGTAATCAAAGGGACAGTAAATCAGCAGGATTTTAAAACTGACCTGCAGTAGAATTGACGTTGATCTGTACAAACCCAAAGAAgggagaaaaacacaaagaattAAAGGTCACAATGAAGCGCAGAATTTGAACGGTAGTAAACAAAGTAGTGTTAATCCAAACAGGATGATTTTAGAGTAGAGCCATCTGGGATAGAAATCATGCACTGGACAAACAGGACATTTAGTCCATGGAGCAGAAAGAAAGGGGAACGCTCAAACATAAAACACTTGTGTTATGCGCACGCATGTTTTTAATCAGACAAACCACAGTGGCATTGCTGTTTCTTCAGTAGTAGCAGTTTGGTTTAGTAAACAagcttctatctatctatctatctatctatctctgaaAGTATTTCAATCTCAttacacagatacacatttTGGTAATATTTTGTTTGGATAGTTCACATTAGACTCTTTGTTCACTGACACCATCaactttttcttaaaaaaattccaatcgCAagcattttaattgttttaatccTAAACTTATGGTTTTAAGCCGtaattctttcacaaatgtacactttattaggagcacctatacacctgctcatttatgcagttatccaatcagccaatcaggtggcagcagtgcaatgtataaagtcatgcagatacaggtcaagagcttcagttaatattcacatgaaacattagaatgggggaaaatgtgatctctgtgactttaaccgaggcatggttattggtgccaaaggggctggtttgagtatttcagaaactgctgatctccggggaatttcacacacaacagtctctagagtttacacaaaatggtgtgaaaaacaacaacaaaaaaaacatcctgtgtgccgAAGGTCTGAAACACCTTGATGAGAGACGTCAGAAGAGAAAGTCCAGGCTGGTTTGTACTGACAAGAAGTCtgtaataactcaaataatcactctttacaaccatggtgagcagaaaagcatctcagaatgcacaaaacatcaaactttgagatggatgggctacaacagctgaAGACCATTATCAGGGTCCACTcccgtcagccaagaacaagaatctgagtctatcatgggcacagactcactgaaactgcaccagaaaaagaccagatgatttttttcccctaatcttcagctgtccagtttgggtgagcctgtgcccgtGA

Function

GO: NA

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04974 Protein digestion and absorption
ko05165 Human papillomavirus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4385 lncRNA downstream 68025 6662405 ~ 6662757 (-) True G3682
XR_003402789.2 lncRNA downstream 96148 6616714 ~ 6634634 (-) True LOC113526577
TU4370 lncRNA downstream 149514 6580959 ~ 6581268 (-) True G3668
TU4142 lncRNA downstream 488356 6242200 ~ 6242426 (-) True G3468
TU4093 lncRNA downstream 553805 6149492 ~ 6176977 (-) False LOC113526501
TU4545 lncRNA upstream 116925 6849042 ~ 6851986 (-) True G3832
TU4548 lncRNA upstream 120998 6853115 ~ 6857583 (-) True G3835
TU4553 lncRNA upstream 127339 6859456 ~ 6859832 (-) True G3840
TU4556 lncRNA upstream 150778 6882895 ~ 6883247 (-) True G3843
TU4564 lncRNA upstream 157644 6889761 ~ 6890053 (-) True G3851
XM_034306160.1 mRNA downstream 244172 6393785 ~ 6486610 (-) True scospondin
XM_026913593.2 mRNA downstream 339393 6184134 ~ 6391389 (-) True kcnh2b
XM_034306610.1 mRNA downstream 339413 6184134 ~ 6391369 (-) False kcnh2b
XM_026913588.2 mRNA downstream 553755 6103706 ~ 6177027 (-) False LOC113526501
XM_034305696.1 mRNA upstream 250048 6982165 ~ 7028393 (-) True vopp1
XM_026913995.2 mRNA upstream 1026267 7758384 ~ 7766765 (-) True napga
XM_026913505.2 mRNA upstream 1038542 7770659 ~ 7803866 (-) True si:dkey-192l18.9
XM_026914317.2 mRNA upstream 1078238 7810355 ~ 7822642 (-) False zgc:111976
XM_026914316.2 mRNA upstream 1078241 7810358 ~ 7822639 (-) True zgc:111976
TU4104 other downstream 340074 6271436 ~ 6390708 (-) False kcnh2b
TU4064 other downstream 645126 6069359 ~ 6085656 (-) True G3420
XR_003402769.2 other downstream 1744072 4983218 ~ 4986710 (-) False LOC113526375
TU3260 other downstream 1825575 4900886 ~ 4905207 (-) True G2709
XR_004579200.1 other downstream 1894923 4832683 ~ 4835859 (-) True LOC113526482
trnae-cuc_2 other upstream 825632 7557749 ~ 7557820 (-) True trnae-cuc_2
XR_004578678.1 other upstream 1176215 7908332 ~ 7921917 (-) False fxyd6l
TU5508 other upstream 1592465 8324582 ~ 8367964 (-) True G4658
TU5903 other upstream 2286290 9018407 ~ 9112988 (-) True G4948
trnap-cgg other upstream 2993133 9725250 ~ 9725321 (-) True trnap-cgg

Expression Profile