RNA id: TU4548


Basic Information

Item Value
RNA id TU4548
length 4469
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G3835
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 6853115 ~ 6857583 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgcatttcatttttagccTCTCagtagggctgcacgatataGAAGAAAAATGCGATATGCGATAACTTGTTCAATAATGCGATATGTGGTACGATAATGctttaagtgtgtaaaatcaatttaaattatacttatatatatttaaaactgaaagaaaatgacagaacCAGCATACGTTTCATGttgttttgaggaaaagaaagcattctctgctatgtACGTCGCCCTAAACCTCAGACTtttcgtaactttttgaagtattaaaatcgctcggttatcgcaagcccttgcGATATTCTTCTcgcgatatttacatttgcgatattatgataattttgatatattgtgcagccctaccTCTCAGCAATGCTAGCTAGACCTGAGCAGTATAGCAAACTTATCCAGACTGTACCTGTATGTTAAGACTTGAAAATAGCTACATGTACGTAAAAGTATCATTAAAATACGATTAAACGTTGTTTAACTGATGGCTACTTTGACGCTAGTCGACTCGCCTTGAGGAAGTACCACAGGCATTAGCACAGGCAggtgtttttgtgtaaaacGGTGTGCTGTTGTGCCAGTTGATGTTTGCATACGCTACACTAAATGTTACCGTCTCCACAAACGCAGTGTTTTCATGTGGTTGCGCTGACTGtcttgattttgtttgttttagttacTTAGCTACAACCAACACTGAGTGCCGTCAGGAAAAATCTCCCCATGTTAATAAGATAAACATGAGCAAGATACTGATCGAGTGCAtgaccctaaccttaacccaaCTTTTAACTAAACATGGTTAAAAAACTGGCTTAATGCCAATAAAAACAATGGCTGGAATAAACTCAGTGTTACCTTTTCGTGACCAATACTACATGccttaaagatatttttaaaatataattttcaaacAACAACAGGATACTAAATGAttgtgtgcggagtttgcacGTTCGCGCcttgcttcaggggtttcctccgggtactccggtctCCTCCCCCAGTTCAAAGACGTGCATTGGCCTCtttaaattgtccgtagtgtgtgaatgggagtgtgtgtccatagtgtgtgaatgagtgtgagtgtgtgtgtgcgagtgggCGCTGTGATGGTttggtgtcccccaccttgtgcccctgGCAATGAGCTAAGTCCATGGAAGGTACAGGTTTAATACTACATATCGACAATCGCAGTCCTCTTTGAAACAATTCTACCAAAACAAATGTTACGATAAGTAAAATAACGACTAAGTTTGTTTAgccatttcactttattttttgcttatGTTTTTTATGCCATGACGTTATGTTAAtatattcatgttaatgtttatgttgGTCTTCCATTTTAGGTCCATTTCTTTCCCATTAGCTTACTGTTTTCTTCTCATTCTAGCATGTTTGCTTTCTGTACATCCATCCCCTTTAACGCACTCATTTTGCACACAGCCCACGTTTAAGACGGAATAGATGCCAgttctgttatttatttgactgttattattacacacatggGCCATGACTTCATATTTTTTGCATGTTCCTACTCTTAACCACTCTCTGATGCAACATTTAGACATACACAGAAGACAGAAAATATGTCAATAATACTCCATTTACAGGTTCGGTTTGAGGGAAAAATCCTTACTTGATGAAGTGCTTTTACTCTTATGATGGACatttctttgcaaaaaaaaaaaaaatgtcttttgattactgaaataaattttgttttcattaatctcaatctgcttttattattttatatcctGCGTTCATTATCCAATCTGAGATTCGCTCTATGTGAATCACTCGTTTGATTTGAGCaggtattatttttaatgagatTATCATCAGGTCCACGTAACAGTAAAACCATAATACCCACTCTACACTaataatttagcatttaaaaataagaaaagaaaaaaaaaagccctgctGTCAAAAtgactaaacaaaacaaacttgcATTAGCTTGCCAAACAGCTGTCCTTTTTATCAGTCATGCTTCTAAAACTGTTACCTAGAGCCATTTTAGATGCTTTGTGTTACAAGAGCAGTTTCCTAATCTATAACAATCTCTCTGTAATATTACACTTGGCCTCTTGCTCAACTGTGCCTGTGAGGTGAGAACAGCTTCAGCAGAGTCTGTCACTTCCCTAGGTAATACTATGTAAATTATTCAAACATAAAGACATGATGATGCTATACTTTCTGCAGTTAAGCTCTTGGAGAACATCTCCTGGTGCTCTGGAGGAGCTAACAAGCCTCTCAAGATGCCAAAAAGTAATGCTTGACAATACTCTGAATTTGATTGGTTGGCTTTGGGTTAAGAAAAAAGCGTCTTATTCCAGCGTCTTACAGCtgtatgtatttacattttaaactaaaGATGGATCAGCGTTCTGTGAGGCCAATCCTGATCGACCGCacgaccctaaccctaacccaactTTTAACTAAACATGGTTTAAACTGGCTTAGTGCCAATAAAAACAATTGCTGGAATGAACTCAATGTTACGTTCTCATGACCAAAAgcttaaagatatttttaaaatataattttcagaCAACAACAGGATATTAAATGATTGTGTgttgagtttgcatgttctcgcTGTGCtgcgggggtttcctccgggtactccggtttcctcccccagtccaaaaacGTGCGTTTGcgtctctaaattgtccgtagcgtgtgactgggtgtgtgtgcgcgtgattTTGCGCTGTGATGGGTTGGCGCCCCgttcagggtgtcccccaccttgtgccacaagtcccctgggataggctccaggctccctgcgaccctgtgtaggatacgcagtacagaaaatggatggatggatggatggatggatgaatggatggatgattgtTGCACCATCTCTCAAGCAGACATGCTGCATTCGGCAGtcccatatttaaaaaaatagtcttgatatttttctttttttaatgtaggcCTATAGAACAACGTGCCGTAAGCATATGGCTGTGCAACTGATTCAGAGGAGATTGAGTCACGAGGCTGGTGAGCTTAAAAGAAACGTGGGACTGATGTTGAACTCCATATATAGCTTGTAAAGCTCAATGAGGTAACGTtatttttatgatgaaaaaCTGCCACACTGACATGCACACAGTTCAGTGCATGTAGTTTCCGTTCAGTGCATGTAGCAAAATTCGGTTCACATGTTTTGTCTTACCCTTTCAGTCCGACAAAAGAAATATTCACTGAATCATCTGTGCCATCTTCAGCTCGCCCAACGCTCACGACTGATACAGATCTATTTTACCGCCTATCTTCACCTCCATCTTCACCAAGCTGAAAGAAGGTTTCCTTTCACACACTCTGGATCCAAGTGAAGCCGTCTTACCTCTTAACACGTTAAGCCCTCAAACAAAAGTACAAAgttattttacacacaaactacttaaataattaattctaCTGAAATATGTACAATAGTTTAGCTGATGGGTTTAAAGTGCccctgaaaaaaaattgtgtttcagagctttttgtatCTGATTCTTATGGAGATCAATATGATATTACTGTagaaatgttgaaaataaaaatttttgatGACACGTTTCTGCGCTAGTTTTGTGTTCGACCAATAAAACGCTCTCTAGGACGTTTATGCCCTGCCCCCAGGGGCAAGACTTGCTCTAGAGTAGCAGCTCATTAGCAGCAAACATTGTCTATTGGTGCATCTTTGGCTTTGTGtcttctctctcccctgtcaatcacagcccCACTAGCTAACTGGAAGCATCTTGCGAGCTCacgtatgcagaagagggcagatagcgctcaCCTCCCAGTGCAGGGTTTCCCCTGTCTAAGTGTTTTTGCAGAGCGCCTTAAGCCGAATGAACGTACAAAGGCACTTAAGCGATATATCAGAATGAACGTAAAAACAACAGTGAGAGTTCTAAtgcgctgaaaaaaaaaaagaagtggcTTGATCTAGCTAGTTAGTTGACGTTATATAAAGATACCTTGAAATAATGTTAGTATTTACCGTGGTTTGGTAGCTAAACAACGTTCACACGTAACGTCTTTTTCTGATGAAAACAGCTGGTCAacgcatttttttttaaacaaaaaaaattttttcaaaatgcagTTACGTCCCAAAAGCAGCTCAGGGCATTTTTGAAAACACTGTCTACTCCGTAGAATTATGATGTAAAACAGGTGCTGACGTTTACAAAAAACGTTACGTACGAACATAGCCTTAGGTAGCTTCTTCGCCAAACACTTGCGGGTTGTGCAACATTTCCCACGACTGTCCCTGACAGGAAGTTTTCTCCCCGATCTCGCAGTGTAATGTGTAGAGCCAGTCGCACACAGTGATGCAAGTCCTCATCTAGACAGTCATGTAGTGTGAGTTGCCTTGCCTGCCTACAAAATtccatttttgtaaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4545 lncRNA downstream 1129 6849042 ~ 6851986 (-) True G3832
TU4436 lncRNA downstream 120998 6730782 ~ 6732117 (-) True G3730
TU4385 lncRNA downstream 190358 6662405 ~ 6662757 (-) True G3682
XR_003402789.2 lncRNA downstream 218481 6616714 ~ 6634634 (-) True LOC113526577
TU4370 lncRNA downstream 271847 6580959 ~ 6581268 (-) True G3668
TU4553 lncRNA upstream 1873 6859456 ~ 6859832 (-) True G3840
TU4556 lncRNA upstream 25312 6882895 ~ 6883247 (-) True G3843
TU4564 lncRNA upstream 32178 6889761 ~ 6890053 (-) True G3851
TU4549 lncRNA upstream 35225 6892808 ~ 6894604 (-) True G3836
TU4551 lncRNA upstream 39259 6896842 ~ 6897767 (-) True G3838
XM_034306160.1 mRNA downstream 366505 6393785 ~ 6486610 (-) True scospondin
XM_026913593.2 mRNA downstream 461726 6184134 ~ 6391389 (-) True kcnh2b
XM_034306610.1 mRNA downstream 461746 6184134 ~ 6391369 (-) False kcnh2b
XM_026913588.2 mRNA downstream 676088 6103706 ~ 6177027 (-) False LOC113526501
XM_034305696.1 mRNA upstream 124582 6982165 ~ 7028393 (-) True vopp1
XM_026913995.2 mRNA upstream 900801 7758384 ~ 7766765 (-) True napga
XM_026913505.2 mRNA upstream 913076 7770659 ~ 7803866 (-) True si:dkey-192l18.9
XM_026914317.2 mRNA upstream 952772 7810355 ~ 7822642 (-) False zgc:111976
XM_026914316.2 mRNA upstream 952775 7810358 ~ 7822639 (-) True zgc:111976
TU4104 other downstream 462407 6271436 ~ 6390708 (-) False kcnh2b
TU4064 other downstream 767459 6069359 ~ 6085656 (-) True G3420
XR_003402769.2 other downstream 1866405 4983218 ~ 4986710 (-) False LOC113526375
TU3260 other downstream 1947908 4900886 ~ 4905207 (-) True G2709
XR_004579200.1 other downstream 2017256 4832683 ~ 4835859 (-) True LOC113526482
trnae-cuc_2 other upstream 700166 7557749 ~ 7557820 (-) True trnae-cuc_2
XR_004578678.1 other upstream 1050749 7908332 ~ 7921917 (-) False fxyd6l
TU5508 other upstream 1466999 8324582 ~ 8367964 (-) True G4658
TU5903 other upstream 2160824 9018407 ~ 9112988 (-) True G4948
trnap-cgg other upstream 2867667 9725250 ~ 9725321 (-) True trnap-cgg

Expression Profile