RNA id: TU4547


Basic Information

Item Value
RNA id TU4547
length 5506
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G3834
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 6910062 ~ 6915567 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacactcATTTCTAGTCCACTATGTTAGAATGGCACATCAGCGTCACTCCCCTACGTTCCTATGTTGTTCATTTGTACTTCTGTACACActataaaaagtctataaataatgctttaaaaatcAAGTGGGCCACAAAGCCTTAATGAGAGCTCTCTCTGCCACCAATCACTACTGACCAGCtcggactttttttttttttttttttttacaaaaaggCCCATAATGCATTTTCTACACAATTGAGAAAGAGGCATTAAAATACATGGTCTGATAAAGCACTTAAGAActaaagaacagaacagaacgaGAAATAAAGTACAGATGatggttcaaaaaaaaaaaacagttcatttaGACACAAGAACAACACAATGCCACATAAATGTACCACTGACACAAAATGTGAATTCTTCAATTTAGCATTTCATAGAAACAAATTTGCAAACTTGAAGTAAACAAATAGAATATATACAGTGAGGTAAAAATACATTGGTCTTTGAAGgaggtattttttttcctctggattactttctgaccttttttttttttttaaactaattaagcctttcacctttttttcttcttttaagaATTTCCTTAAAAACCAAAATGATGCAAACATTAGAAATCAGTCGCATGCAGTGCATCATTCTACATGGAATACAAAACACAATATAGTCAAACTTAGGCACCAAATAAAACTTGATAAAGCTTTCTTCTGCCTTTCCATaatgtacgcacacacacacacgagtgcgcacacacaggcgtgcacacacacacacacacactcacacacacacagaatgaaaaAGCACCTTGGTTGGCTCCGCGGTCCTTTAATGACCCAGACTCCTGCTTTCTCCACGCCGGTCCATTTCCttcaaatcaaatcagctccACTGTTTCATTACCTACTCACATGATTTTTGGTGCTACCGGGCCACCGTCCCTCCAGGATCTTTCTCACAGTGTCCGGATGTTGGCATAGATAAAGAATCGAACTGTAATAAATAACTTGGCAATTGCCAGTAGAAAGCCTGAGGACTGTGTCGCCGTACACATTTGCATAACTCACTAACCCGTCTGTACGACCTCTTCGGCATATGCATGACCTTTATTGAAATTGCTCAGCGAGTCGTGCTCTAATTGGTGGCACACCAATTGGTGGGAATGTCGAGTTTAAAGTTTACGTTCACGTCTGCTGCATTCAGGAGAGACATTTACCTTTCCAGAATTATtccacttcaaaaaaaaaaaaaggcatgagTTAAACTGAGTTAGTCTTTTGTGCAAATATCTGTGCATGGTTGCATGGAAAAGCTGCATAATGCATCATAAAaagagcaaacacacagcaattTATCAGCAGACGGTTGTGCAGGAGTCTGGGCCACATAACAGGACCCCTAATGAAAACACTGTCGGTTAAAATCACCCGGGATGAGTGTATCCTCGCCCATGTTCAAGGGTGCAGATGGGTTTGGAGGCACAGAAGTAAGTGACATCGAGAGCAAAAGAGCGGGAGAGAGGTCGAGGAGCCTGTCCGAACAGCCCATGCCTTCCTACTGTACATAATATGAcgttaaatatatgaaaaatctCCTAGCTACAAGACGGTATGCAGTGAGGGAGCAAGTGTTATAGAGAGAGTCCTCTCGCTCTCACCCGCTCGCATGGAACCGGAGGTGCAGCGGTATGGATTTCCTGTTAAAAGTCATAGCTGGTGTGGTTTGACCTGTCAAGGCCAGGAGGATACCTGCATGTCACTGTGAGGAAATACCTGGATATGCATGTTTTCGCGTCTAAATAGGTCACTGCTGAATCcgtaaagaaaaaaaggctgctgGTGATTTAAGACAGAAATGTGTCGGACGAAAAATGCACGTAGGCCCAGGAACGTCTGCAGTGGCACGATGAAATAAATTTCCCAGAAAGTATGATTACACTCGCCTTTGATGGACCTTAGCAATAATAAATGACCAAAATCTCATTTTCTTCCCTTTTAGGCTGTATGATATAATACCTTCTGGAGGGGATGTGCTCTATCCTTGACCATACTGGGTTCACTTTAACTTCAGCTGTCCAATTTTTCTTGACCAATTGTACGTGCCTTAGGGCCACCAAGCTAGCAGACAAGTTACATACACTTAGATACTTATTTacaatgtacatatttatacacacttcCTCCATTATACATTTACTCCACTCAGGACGTTTCTCAGCATataacaggaattaatttcGGGGGGGGGAAAACAAAAGTGTACTGGAGCAGAAAAGGGAAATCTGTGTCCTCTAACCAAAAACGTAATAAAATTCATTGCATGTATGCcagttaggaaaaaaaaaaccctgaatatGGTCTTATACTTTTATCTAAAATGAGTGAATTGATATTTCATACATGCATATCATACATATTTGCATATGTGGAGTGTGGAAGCACTCCACATGTGCAAATAACCAAATCGAGCAAAACCTGAGGAGAGAAgaatgacaaaaagaaaaaaaaaatcaagcgtGCTTTCTGTTAAAAGCATTTTCCGAATTTTACTTTGACATTTGAAAGGTTGTCCTACATATTTTAAAAGCACTGTGGAATGACAAAGATTTCAGGAATGGGCCTCGATCTGAAAGTTGTTCTATTCAAATCCTGCAAACTAAATTACCAATCATTGTGAGAACTGAAATCCTTTTTTTGCTcctgtacagaggcaaaaaaaatgtagcCATTTTGCCTTAAGACACAATCGATCCAAATTTCTGACCAGTGAAAAGAAGCAACACAAATTAACATCCATTTGCCACACTAATAAACATGCACAGTGTGTTGTGTCTAATGAAAGATTATTCCCTTCCCCCTCCCCATGTTTTGGCTGAAGGGTATAAAAGCTTGTATATAATCTGTATAATCACAGTACAGGAATGCACTGTTAACATGCCATGCTATTCAGAGGCCATCTTGGCCACTGGGTGTTAATTATGTTTCACTCTAAAGTGCCAAAAAAAAGCAtcagacaaataaaacagacaaaacatgATGAGCATGCTAAGTACCATGCTTCAACCAGCACTAAAGCCTTAAAATGGATGCTTTAGATAAAGTGGACATTCCTCAATCAtccaaacaatacattttataatttggATTAtaacacagcactgctgaacGCTCaattctgatcagaaggtgttgatttattttctataacagctactcggacagtagtgctggctacAAAGTTAACATAATTGTCCGAATATGCTTTCGTTTCTATACAGTGACTTGTATCGTGGATGCTCAATATAAATGGattgaaaaaatgaaacatgtggtgatgtgtttatttagcattttttgaaaggagactccagtgtcagcactgtgtaacagtcagaggtaaagctgtaccaAGAAAGTCTTCAGACGGAGGGCTTTCcggtttgggtttttttttcccgtaTGACTAACACAAACCAGGTtgtaacataaaatgtaactataaacgaatACAAAGTATGACGTGTagtaaaaaaattgtaatcgtggcaaattgctgttttatATGAGGAATGAAACCCATCacgatgtgctgttattggaaaataatcaatttcatgGTAGTTCACACTAACCCATCGTACTTTTACCTACAACAGCGCGGCACAAAGACGCTTTAAAATGTGATAACGAATCTCGTTCGGGTTTGCCTTTCTGACTGTAAGCTTATTTGTGTGGCAAAAAGGACATCCTTCGACAGATATAAGAAACAAAACTGCCAGATTTGTTGCTACATTTAATCCTTCCGTTATACAGAACATTAACCCTACTGTTTAAGGACAACTATTTGAAAcatcacttgtttttttttttgttttttgttgtttttttgttgtttttttttaacaaaagaggAACATCCAATGCTATTGGTCCCTTAAGGCTTGCTCAATGGAGATCTGAAGCAGTCAACAGGATTTTTCTTAAAAGTtacattctacacacacaaaaaaaaaagagttgccATAAAATGTTGGAAAATCTATGGCTTAGTAAAGATCTATTTGCTATATAGATAAATGAATATACTCCATCATCTTTGcaacactgaaaacaaaaagtACCATAAGaaagaccatttttttttacacggcAACTTGAGTAATGCTGATGTGTTCAACTTCAAACATTGCAATGAGTTTTTATTTAGTCATACTGCTCATAggttcttttttctatttcttcttcttcttttttttttttttttaaattttcatccAGTCTTCTGCATTAAAGCGCCAGTCTGTGAGAGTAGCTCAGTTTATCCAAATCTGTGTTTCAGTTAGGAATAAAAGAGAGTGCATTCCGGGGAACGAAAAGAGGCCGACGTGGCCACGTTAGGTCTCAGAGCATCCTCTTTCCAGATCATTGTGTCAGGGAGGAGCGAACATGCGACAGCCAATCCTCAGCTGCCATTCAGCAACACGGACTGGTGATCAGCTTTACTGGAGATGAACTGAGGTCTGAGCTGAAATGTCCCTCTGTGCTGCattgaagatgatgatgaaaaggATAAAGATGATGTAAAACCGAAGAAATGGCACCAGCATGTTGTGTGTGGTGGCCCCTTGCTAACGTTCGCTGCGTGTGCATAATAAAGACGGACGCCATGACAGACTTGTCCGCGAGCCTGTGACGGTAGCACTCATTCTCGCGTTCTCTTTCGTTTAGACGGACAGCGAAAGGTAAAGGGGCCGAGCCACGGCATGAGGGAACGTTGGTTTAAAGCAGTGGCACTTTCCGGTAACACCTGGCTTGGAGGGCACGGATGCCATTGTAGCTGTTGAAGCTGTTGTAACTGTTGCCGTAGTAACAGATCATatcaagatataaaatataGGATAGGATTTCTCTATATTGCATATGTTGCAGCATGTTTGCCAAGACTGAATGAGGTCATGTCCAGTTTGttgggaaaaaaacccaaagcaaaaaataagttagaaaaaaaaacaagtgttgaggaaagagagaaaacacaagGTGCAAATTCCCTATAGAGATATGTCTCCAGCAAATCTCATCTCTCCAAGACTaccaggaaaaaaatgtacctGACCATTAAATGACCTTCACTGGCTAAAGTCAACCATTcaaagctaaagaaaaaaaaatccaaacaagcCTTCATTCTTAGTCCTCATGTCCTCCCTCTCGTTTTCTCCCTCACGCATGGAGGACGCAAAGTTGTAATGCAATAATCATGGATAATCAGAAAAATGAGCATGACTTTTATAATGAACAGATatttgaaaaaacaaagaaacaaaaataataataatatgccaAGGTGTGTAGCTCTTCCGGAGCGCAGGCCTACATTTTAATCCCCTCCTGCTGGCTGAGCTGAGAGAGCGTCTTCTTGATGCGCAGGGCGGTGAGGCGAGCAGCTCCGTTGGCATACCAGCATTCTCGCATGATCTTCGCCATCACCCGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4550 lncRNA downstream 6161 6903425 ~ 6903901 (-) True G3837
TU4551 lncRNA downstream 12295 6896842 ~ 6897767 (-) True G3838
TU4549 lncRNA downstream 15458 6892808 ~ 6894604 (-) True G3836
TU4564 lncRNA downstream 20009 6889761 ~ 6890053 (-) True G3851
TU4556 lncRNA downstream 26815 6882895 ~ 6883247 (-) True G3843
TU4570 lncRNA upstream 25879 6941446 ~ 6941842 (-) True G3857
TU4597 lncRNA upstream 65569 6981136 ~ 6981729 (-) True G3884
TU4634 lncRNA upstream 200951 7116518 ~ 7116723 (-) True G3916
TU4644 lncRNA upstream 372628 7288195 ~ 7288436 (-) True G3926
TU4704 lncRNA upstream 477555 7393122 ~ 7393386 (-) True G3979
XM_034306160.1 mRNA downstream 423452 6393785 ~ 6486610 (-) True scospondin
XM_026913593.2 mRNA downstream 518673 6184134 ~ 6391389 (-) True kcnh2b
XM_034306610.1 mRNA downstream 518693 6184134 ~ 6391369 (-) False kcnh2b
XM_026913588.2 mRNA downstream 733035 6103706 ~ 6177027 (-) False LOC113526501
XM_034305696.1 mRNA upstream 66598 6982165 ~ 7028393 (-) True vopp1
XM_026913995.2 mRNA upstream 842817 7758384 ~ 7766765 (-) True napga
XM_026913505.2 mRNA upstream 855092 7770659 ~ 7803866 (-) True si:dkey-192l18.9
XM_026914317.2 mRNA upstream 894788 7810355 ~ 7822642 (-) False zgc:111976
XM_026914316.2 mRNA upstream 894791 7810358 ~ 7822639 (-) True zgc:111976
TU4104 other downstream 519354 6271436 ~ 6390708 (-) False kcnh2b
TU4064 other downstream 824406 6069359 ~ 6085656 (-) True G3420
XR_003402769.2 other downstream 1923352 4983218 ~ 4986710 (-) False LOC113526375
TU3260 other downstream 2004855 4900886 ~ 4905207 (-) True G2709
XR_004579200.1 other downstream 2074203 4832683 ~ 4835859 (-) True LOC113526482
trnae-cuc_2 other upstream 642182 7557749 ~ 7557820 (-) True trnae-cuc_2
XR_004578678.1 other upstream 992765 7908332 ~ 7921917 (-) False fxyd6l
TU5508 other upstream 1409015 8324582 ~ 8367964 (-) True G4658
TU5903 other upstream 2102840 9018407 ~ 9112988 (-) True G4948
trnap-cgg other upstream 2809683 9725250 ~ 9725321 (-) True trnap-cgg

Expression Profile