RNA id: TCONS_00007794


Basic Information

Item Value
RNA id TCONS_00007794
length 8971
RNA type mRNA
GC content 0.42
exon number 21
gene id XLOC_004087
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 18395879 ~ 18468570 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGCAGATGAGCAGAAAGGAAGCCTGGCGAAAAGCATTTAGTGTTTCTAGAACCTGTTTTTAGGAACATTTGTTTACCCAAAGGCATTTTGAGAGGCTACCAACAAACTGACTGCATGATATTCAGGAAAATTAACTTTACCGTTACAGATTGTGAAACAGCTAATGTTTTGTAGATTATACAACTAAATAGAATGACAAAAATAGTGAAAATGTGGTTTTATTAGAATTTTCTAGTTTTTTACTGCTGTTCAAAATCTTGAAAAGGATCCTCTGAAATGGCTCTTAAAACGTACCATCTTGTGACAGTAATGGAACAGTCCGTGAAAGTGCCATACGCCACTGATGGTTATTGGTTATAGATGTTTTTCCTCTGTGGTTTTGGTCATCGATCCTTGTATTCCCGTGAGGGAGACTGTACCTCCTCAGGAAGCGCGCGGAAAACACCTTCAGTCTCCGCGCGCAGACCGGAGCGCGCGCGCATCTCTCATTCCTTCAGGCGAGAAGCGCGCGGACCTGAAGGGACCTGCTGCAACAGTCGGCAAAAAAACTGATAATTTTTGAAGTCTCGTCGTCGAATAAAACATGAAGTGTTTACTGTTTACTTCACATGCTTTATGACAAATGTCGCTGGAGTAAGTTGACGGCACCTCTGGATATACTGTTACTTCGGCGGAATATCAAGGGATAATGTGGAAGTATTTCAGATGCCGTGGTGGATGACATCCGATAATGAACACAGATTTTTAGAGGCAATTCTATACTTCTCAACCAaagacaaagccatttgactttaactgtgtgctCCACCCTGATGTCAAGGCCTTGTCCTTCCACCCGAGGTCCTAAACCTCCTGTGGCACCCAAACCAAGGCTGGCTTCAGAGGTGAGCCATAGCATTGTGGGCAATGGGGACATAACATCCTCTGACAGACTGGAATTGAAGCAAGATAATAAGTCAGATGTTGCACAGGAGGAATCAGATAAATCCAGAGAAAACTGTACTGACGATCAAGCAGAGAATGACTTATATGACAAAGAGTTCGCTGTAAATTATGACACTACTTGCTATGATGAAATAGAGGACAAATTGCAAATGGCAGTGGATGAAACAATGGGAGAGGATGAAGataaaaatgtcactgaaatacagcaTGCAACAACTTTGAGTTTATCGGAAGCTGTTGATGAATGTCTTGATTCAGCAGATGAGTTCCACAGCAAAAGCGCTGATGATATCAAGCCAGCTGAGAGCAGAGAAGTTATTTATAATGTACTTGAAGACACCAGTGCATGTTCTGAGAATGATACATCGACTAAAGCATGTGAATCTCAAAGTCCTTATGAGGAGATTGAGGAACCACCATTAAACAGTTTTCAGTGCGCCAATGGTCAGTACGAAGAGGACATTGGAGCAGGTGCAAACTGTGTCCATCATGAAGCAGAAGAAGATGGGACTGGACTTTCTTCAAAGGCTACAAACTGCAGTCAACCCTCACTATGCGAGGAATACCCTTATGATATCATTGGCACATTGGATGACAACAATACTTGGCAGGCTGAACGGGCTACCAAAGACCCATCTGGACGCTTCAGGTTTGCAGAGGAGACAGAAGATGCATTTGAGCCCTACTCTGTCATTGAGGTGGTGCCAAGTGATTTGATGTGCACTGCTGATCCAGAAACAAGATGCACTGATGAAGAGTCGAGCAATGTAAAACCAATGGACTCTGAGAACACAACAGAGGGAACATCAAACCAAGAGCCTTACTATGTGTCATCGGAAGATGTGGAAGATTTAGAGGAGGAACAGGCAAAATTAGAAAACGGTGTCTCTCTACCTGCTTCTGAGGTTCAGGAAATGGACAAAAATGAAGAGGTAGATGATTATGCTGATATTGAAGACCATGAAGGTGATGATCACCAGGTGGAGTGTGCTTCGTCAGAGGATTACGTCGAGATAGGAGATGAAGATGAACCATTAAACATGGAGAGGAAAACCAAGGGCAAGAGTGTAAGGGAACGGTCAGCTAGACGACGACATGATCTTTTGAGTCAGAGGAACAGCTGCCAGCCACGTCTCAGACTATGCAACATCACTGTTCCTGCTGACCTGGATTTAGGCAGAACTCCAGAACTTACAAACCGTGTTGTTTTTGCCCACACAACAGAAGCCTTTGAAGAGGACATCGAAGAGCTGGACTGCCATATTGTGCCTTTCTTTGAGGACTCGGACACAGAAAGTGACGAACACATATACGAGGAGGCTGGCTTCGACTCAGAGGGTGAGAACTTTATCTCACTGGACAGGAAGAGCATTGTGACAAGATCTCGCTCGCTTTCTGGGAAAGTACCTGGATATGTTCCTGAGACTGTGCCTGAGGAGACGGGCACGGAGTACCAGTCTCACGACTACTACACTGTGGCCTTAGACCAGAATGGAGATCCACATCCAAAGCCTTCAGATGAAGCGGAAGCCAATAGAATTATTCCTTCATTGAAACCAAGGCGTTTTCTTCTTTCCCCTCGGTCACTCTCAGTTGAGGGCAGAGATTTGCAGCTCTCAGGGCACTTTGAGGGTGAGAAATCTCTTAGAGAGGAATACAGACTGCAAAGAAAAGATGACACACTTTCTTTGCCCTGTGTCATTACTTCCTCTGGAAGCTTTTCTCAAAGAAGTCACCAGTCCTCCAGTGGCGTGTCGACACCTACATCTCTAGTCGATATCCCGCCTCCCTTTGAGTTAGCTTACATAACTAAGCGGCCTGTTACCAAAAGCTCCCCATCACTTCTAATCCAACATGATTCTCCTGACAACCCCAAAAAGAAGAAGACTTCATTTAAACGCTTTTTGGCTTTAAAATTTAGGAAAAAATCAGAAAGCAAATCCCGGGGTGATGGCAGTGTCCGCTCCTCCAGGTCATCGTCTGAGTCTAGCCATCATGGGCCCATTCGAGTGTTGGAGCTTGATCGAAGGAGCACAAGTGGCTCCCCAAAGCTTCAGTCCCATGCAGGAAAACCTCAGCGTAACTCAGAAATACCCACCACGTTTCTGCTTTACAAAGAGAGACAAAGTAGGCAGGGTGCACTCAAGAGTTATAACAGCAGGGGTATATCCAGAGTCGAGTCCTTTGAGGACCGCACTCGACCCCCCTTCATGCCCTTACCACTCACTAAGCCCCGCTCTATCTCCTTTCCAAGCGCAGATACGTCTGACTATGAAAACATTCCTGCAATGAGTTCTGACTATGAGAATATTCAGATTCCACATGGGCGGCCTACACGTGCAGTCACTATTACAGAGTTCTTTGATGACCACAATAGGACAGCAGCACCTGCCAATGAGAACGATGGCTATGTGGATATGAATAGCTTTGCAGGAATTGAAAACAAGTCCACCACTCGAGAGCAAGATACTGAAAGTGCCTACACTGAGCCATTTCCTGTTTGTCCTGTGTCTGCAACTGTGTCCAATGAGGAAGATCATGGACGCACATCTGAGGAAGAGGATGGTTGTGGAGACCACTGTCATGATCGACAGATTGATGGCCGATCAAGAGCCTACTATGTTGCCAAAGACCTGGTGGACTCAGAAAGAGAACACGTGAAGGCTCTGAAGGTTCTTCAAGAGGATTTCAGGGCAGCAGTGGAGTCAGGAGGAGATGATAACGGACCTCTGATAGAAAATGGGAAGCTGGATGAGATCTTCAGCACTCTTCCTCAGGCATACAGCTTACACAGCGAGATCCTCAACGAGCTGGAGACCCGTATTAAACAGTGGGAGGACAGTCCGACAGTGGTTGATGTGATATTAACGCGCCGAGCTGAGTTTTCTTCTTTTGCGACCTACATCTCCAACTATGATCGCAGCATGTCAGTGCTGGACGAGAGCTGTAGAAAGAGTCAAGCTTTCGAGGATGTGGTGAAACAGTTTGAGACACAGAATGCAGAAGGAGTTCTTGTTCCTCTGAAACATCAGCTGCTCCGGGTCATTGTGCGTATTCTTCAATACCGCATGCTGCTTACAGACTACTTGAACAACCTCTCCCCTGATTCGAAAGAGTATGAAGACACACAAGCTGCGCTGGTAATCGTGTCAGAGGTCGCAGACCAGGTTAATGACAATCTAAAACACGGGGAGAACCTGCTTCGTTTGGTCCACATCGACTACAGTGTAAGAGGAAAAAGAGACCTCCTTCAACCTGGAAGGGTATTTGTTAAGGAGGGAACCCTGATGAAGGTCTCTCGTAAAAGCAGGCAGCCCAGACATCTCTTCCTGatgAATGATGTGATGCTGTACACCTACCCTCAGCAGGACGGCAAATACAGACTGAAGAACACACTCACTTTAAGTGGAATGAAAGTCAGTAAACCCATCATAGACAATGTGCTGAACACACTCAGAATAGAAGTCAGCGACGTCACCATCACACTCTCAGCCAGCTCTTTAGGAGAAAGAGAAGACTGGTTTCACACACTGAGTCGGGCTATCGCTGATCACGCCGCAGGCCTCAATACCTTCAGCAGCTCCAGCGAGGCCAGAGAGAAGCTGTGGATGTCATTGGGAGAAGCTGCTCCTGTTCTGGTTCCTGTGTCTCATGTGATGATGTGCATGAACTGCACGTCTGACTTCAGTCTAACACTGCGACGGCATCACTGTAATGCATGCGGAAAGGTTGTGTGTCGCTCCTGCTCAAGGAACAGGTATCCTCTAAAGTACCTGAAGGACAGGATGGCTAAAGTCTGTGACCACTGCTATGCTGAGCTCAGAAAGAGAGGTGGTGATGTTCCTGGATCATGTGGGAGTGTGAGTCCACGCACACACAGGGCCAGCAGACCTCTCTCAGCTGTGTTTCAGAGCCTGCAGCCACCCAGCCTTTGGAGGAACAGGAAGAGCAGCTCGCCTCTCACACAGGTGTCTGTGGGTGCAGAGGGGTCCACTATGAGTGGCAGTTTGCAAAGACGCAAAAAAAGCAAAAGGAGGTGGAAGAGGCTGTGGTTCCTGCTCAAAGACAAGGTGCTCTACACCTTTAAAGCACGAGAGGATAAAGTGGCATCTGAAAGTCTTTCACTGCAGGGTTTTACTGTGAAGCTGTCGGATCGATCAGAGGGTGAAGACACAGACAACGTCTTCCAGCTCTACCATAAAAAAACACTGTATTACACCTTCAGAGCGGACGACCAGCCCACTGCACGCAGGTGGGTAAACGCAATGGAAGAGGCCACAGTGTTATAGTATCCAGCGCTCTGTCCAGACGACTACAGAACTCTGCACAGAATCCCTAAACTCATTTGTGGGCTTCAATAAATGACTTCAGAGTCACCTGTGCCTGAGAAACCAGCGGAATCACACCATAaatacctttgttttttttttatctttttggcTGCTGAATTAAATGACAATTACAAAAAAGGCATGTTTGTGCTGTTTCAGGACCAGTCCTACGCCTCGACTACTTCACCGACCAATTCAAAAAGTGCCAAATGTAAAAAACAGTGCAGTTCGGTGAAGCTCAGATGTTTCCAAACCACTCATCTGCATCTGATAAAGgagaatgtttgttttttgttctgttttcagAATCTCAGCAACCTTTCTATATGCAGATATAATTGAGAGCTGTCATTTTATATATTCAtgtaaaattaacaaataaatgaagtaCAGTTCAGGTGAATAGGCTTGTTATagacaatatattgttcatttaAACATTTAGCGTGACATATTCTACCATCTCAGATACACAAAGTTCATGTTTTATGTACAAATGACATCATGTGATATGTATTTACATTTGGATTAGATGCAGAATTGTATAGCCTGACTGAAGCGAGCTGTACATTTTACAATTCtgtgtaatatatttaatttgcaaCTAAGAAACGTTAAGATATTGCCATCATCTGCTGTTGTTCACTTTAAAAAATCTTTTCACACTTGGAAGTACTTTTAATTGATTCCCAAGATGACTCTGTACCCTTATAGAACATAACCGAACCAAACTAgctgattcgaatgttatcactggattgaatgggcgttatcagtgattatcagctgatagatacgggtgcagaaggcccctacttgTAGGCTCAGaaagctgttatcatccatccacatggtttaTCAGCTATATTTCACATACGGctgcggccagaagttaacaagaattatttatattgttttttaaatctcgcattaattgtattttattaacgtctaccccaaccctaaactcaaccgtcacagtaatgtaaaaaaaagatctGGATCTGGGGTCTTCTATATTAGTATAGCTGTTTAGCCATGTGGATGGATTATAACAACCTTCTGAGCCTAACAGTAGGTgaagaaggcccctactggcccatatctatcagctgataaccactgattacACCCATTcgatcgagtgataacattcaaagcgggTGGCCAAACATGGCTGTACAGTAGAGCTGTGCTAACTTTTAGATCTCCAAATTAGAACAAAACGGACCACATATTTGAATATCATCCTATATactagaagtcagaattattagcccccctttgaatttccgtcttttttaaatatttcccaaatgatgtttaacagagcaaagaagttttcacagtatgtctgataatatttttcttctggagaaagtcttatttgttttatttcagctagaataaaagcagtcattgagtcaaggtcaatattattagcccctttaagctatttttttttcaatagtcttacgaacaaaccatcgttatacaataacttgcctaattaccctaacctgcctagttaacctgattaacctagttaagcctttaaatgtcactttaagctgtgtagaagtgtcttgaaaaagatctagcaaaatattatttacagtcatcatggcaaagataaaataaatcagttattagaaatgagttattaaaactattatgtttagaaatgtgttgaagaaaacttTCTCTcctctaaacagaaattggggaaaaaataataaacagaggggataataattcaggggggctaataattctgacttcaactgtatatacaaccTATATATACAACATCTAACCATAAAATATAGATGGTTACATTGGTAATTTAATGTAGGCATAGTTATATGTGCCATGGTGAAAAACCTTGagttcaaaaaaacaaacaggcgTAATGGAAAAAAAGTCCTATATACATTTGTGATAACATCTAACTATGGTATATTGATGGAAACCATGTTACTGTGGTAATTATACTTAAGGTTGGTTGTATGTGCTGCAGTGAAGGCCGTGTTGTGCAAAACCTTCATGTAAATCAGTATGCAAAGGTTGTGAACATCTGTGCCAGTTGatccttttattaaaaataacaaagtaTCATAAACTTTTTGTATATTACCAGTCCTAAAGAGgtggttcacacaaaaatgaaaatttactctatttactcaacctcaagtggttccaaaatttaatgagtttcatttttctgtaaaaggagatattttgaagaatgttagaaattgttacagcctttttcgagaaagcttcttttgtgttcaacagaaaaaaagaaactcaaaccggtTTGTGAAATCCTGAATAATAACAGAGTTTTCACCAAGATGTGTTAAATCATGAACATCATGAAAGATCAAAACTATTTGAATGTGCTGAggtgaattgtgttgttttgtgtatATTCATCTCACTGGAAGGAACTGTTAAACCTAAGTTTATCTGAGCCTTTTTCTGTGACTGCTTTTTTTTAGAGACAAGCTCATGTTTTATTATGATGTCTGTTTTTCTTTGTCTTTGAatgttgcatttttaaagagcTGTATTCTGTAACACTGAAAAAAGTGCCAGTATTCATTCTCAGTCATTTGTATCTGATATTTCCCAATACAGACCCTTTGATCATCCCTTttcttaatgcattataaaagctgaataaaaccACTGCATAAAGATGAATTAAGGGaatgtaaatatgcattttaagATGAAAAATATATGTGCCATCTttgttcacttttattttacagtcaAACTATTATTTCCCATATAAGCGGCTGATATATTGTTGCTAATTGGTTGCATATTAAGACTACTAAAAACCTGAAAGAATATGTCCCAAATCACAATGGAAACCATTAAAATGTGATGCTTTTGGTGGTCAACAGTTGATAGTTTGTACTGGGATTTACTGTGAGGGTTTATATTAGTTTGTACTGGGATTTACTGTGAGGGTTTATATTGTTTTGGTGCAGCAAAACAACCAGTTTTGCAAGAATATGATTATCGtagttgatttttattttcagactCTGATgctagggcgacacagtggctcagtggttagcactgtcgcctaacagcaataccgctggtttgagtctcagcatttctgtgtggagtttgcatgtgttccCCGTgtcagtgtgggtttcctctgggtgcttcagtttcccccatagtccaaagacatgctttaGTTttattgggtgagctaaattggctgtagtgtatgggtgtgaatgcaagagtgtatgggtgttctccAGTGTTGGGTTATGGCTGgtgtaaaaaaatgtgctggataagttttcggttctttccactgtagcgactcctgattaataagaggattaagccgaaaataaaatgaataaatgtgtgtgaatgagtgtgtatgaatgtttcttagtactgggttgcagctggaaaagcatctgctgtgtaaaacataaactggagaagttggtggttcattccactgtggcgacccctgatgaataaagggactaactaagctgaaggaaaatgaccgAATGAATTCGATGCTGATAGCTTTCTCTTGTTATTGTTTAttgataaaaaaacatattttattagataatttaatttacattaaagCTTGAGTAGTGAATTTAACACACCCTCAAACCTAGC

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090428-3 Predicted to enable guanyl-nucleotide exchange factor activity and metal ion binding activity. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm. Is expressed in blood island; cranial vasculature; and trunk vasculature. Orthologous to human FGD5 (FYVE, RhoGEF and PH domain containing 5).

Ensembl:

ensembl_id ENSDART00000155474

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007789 lncRNA downstream 247391 18146659 ~ 18148488 (-) True XLOC_004082
TCONS_00007788 lncRNA downstream 248924 18144285 ~ 18146955 (-) False XLOC_004082
TCONS_00007784 lncRNA downstream 393600 17998053 ~ 18002279 (-) False XLOC_004081
TCONS_00007781 lncRNA downstream 418814 17974191 ~ 17977065 (-) True XLOC_004080
TCONS_00007776 lncRNA downstream 592828 17796609 ~ 17803051 (-) True XLOC_004077
TCONS_00008463 lncRNA upstream 78445 18547015 ~ 18549884 (-) False XLOC_004088
TCONS_00008464 lncRNA upstream 83260 18551830 ~ 18556014 (-) True XLOC_004088
TCONS_00008466 lncRNA upstream 381356 18849926 ~ 18852369 (-) False XLOC_004092
TCONS_00008465 lncRNA upstream 381356 18849926 ~ 18852369 (-) False XLOC_004092
TCONS_00008785 lncRNA upstream 381700 18850270 ~ 18852070 (-) False XLOC_004092
TCONS_00007793 mRNA downstream 11345 18343890 ~ 18384534 (-) True XLOC_004086
TCONS_00007792 mRNA downstream 72820 18283948 ~ 18323059 (-) True XLOC_004085
TCONS_00007791 mRNA downstream 111993 18270313 ~ 18283886 (-) True XLOC_004084
TCONS_00007790 mRNA downstream 142768 18249809 ~ 18253111 (-) True XLOC_004083
TCONS_00007787 mRNA downstream 378592 18015347 ~ 18017287 (-) True XLOC_004081
TCONS_00007798 mRNA upstream 63414 18531984 ~ 18557929 (-) False XLOC_004088
TCONS_00007797 mRNA upstream 63414 18531984 ~ 18557929 (-) False XLOC_004088
TCONS_00007796 mRNA upstream 63414 18531984 ~ 18557929 (-) False XLOC_004088
TCONS_00007799 mRNA upstream 76994 18545564 ~ 18557277 (-) False XLOC_004088
TCONS_00007800 mRNA upstream 92097 18560667 ~ 18601955 (-) False XLOC_004089
TCONS_00007777 other downstream 487197 17906902 ~ 17908682 (-) True XLOC_004078
TCONS_00007763 other downstream 1751366 16644397 ~ 16644513 (-) True XLOC_004067
TCONS_00007758 other downstream 2058993 16332824 ~ 16336886 (-) False XLOC_004066
TCONS_00007751 other downstream 2268201 16127382 ~ 16127678 (-) True XLOC_004063
TCONS_00007745 other downstream 2337572 16058191 ~ 16058307 (-) True XLOC_004059
TCONS_00007803 other upstream 123429 18591999 ~ 18604435 (-) True XLOC_004089
TCONS_00007814 other upstream 711882 19180452 ~ 19180555 (-) True XLOC_004095
TCONS_00007815 other upstream 947608 19416178 ~ 19416315 (-) True XLOC_004096
TCONS_00007850 other upstream 3111356 21579926 ~ 21585161 (-) True XLOC_004113
TCONS_00007852 other upstream 3283905 21752475 ~ 21752589 (-) True XLOC_004115

Expression Profile

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