RNA id: TCONS_00007800


Basic Information

Item Value
RNA id TCONS_00007800
length 6025
RNA type mRNA
GC content 0.44
exon number 20
gene id XLOC_004089
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 18560667 ~ 18604542 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCCCTTGCCACATTCCTGCGAGTCACTCATTTGTGAAATCCCCATACTTAAGCACAGGGATCTGATCAAAACGGTCACGGCAAACCATCTGACTTGTATGTCCAAACGTCTTGATTcttgacagtcgttttcatggaGGAATCTGGGTATTTTCCCACTGAATGGCAATAGCAGCAGCCCTCCCTGCATTGCAGCAGTGTATCAGAGCAGAGAGAGGAGAGCCTGTGTGGCACACAGCAGCAGCCGCCCAATCACGCGCCTCCGTGTGGCTCTCAAACCAATCGGCAGCACACAGCTGAGGTTAAAGATTGACAATCGCTCTGAGAGCAGCAGGGAGAGCAAGGCCCTTCTGGAAAATTCTGCACCCATCTTTGTCTCATCCCTCACTGCCTTTAtatctgaaaacaaaaaacacacatttaaaagctCAGCCTGAAGAACTGTAAAGAAAAGcTTGGCTGGAGGAGAGGGAAAGGAGTCAGAAGCAACTGAAGGGATGGAAATCGCAACACGATCAAAAGTTTCTGATCAAGGGTCAACAGAAAGGACAGTACCGAAGCGCAAGGTCTCCAGCCCTCCTCACTCCTCAAACGGACACTCTCCATCTGAATCCTCTCCCAGTCCTgtcaaaaagaagaagaaaccaGGAGCCGTCAACAGCAGTAAAGACCAGTCAGAACTAAGACATGGTCCCTTTTACTATGTGAAGCAGCCCGCACTCACCACAGACCCTGTTGATGTTGTACCGCAGGACGGGCGGAATGACTTCTACTGCTGGGTGTGCCACCGCGAGGGCCAGGTGCTCTGCTGTGAGCTCTGCCCGCGCGTCTACCACGCCAAGTGCCTCAAACTGGCTGCAGAGCCTGAAGGAGACTGGTTCTGCCCTGAATGTGAGAAAATAACAGTTGCGGAGTGCATAGAGACTCAAAGTAAAGCTATGACGATGCTCACACTGGACCAGCTGTCGTTCCTGCTGAAGTTTGCTCTCCAGAAGATGAAGCAGCCTGGTACGGAGCCATTTCAGAAGCCGGTGTCGTTAGAACAGCATCCAGActatgcagagtatatatttcACGCCATGGATATCTGCACTTTAGAAAAGaatattaaaaagaaaatgtacggCTCCACTGAGGCTTTTCTGGCTGATGTGAAGTGGATTTTGCACAACTGTATCATTTATAACGGAGGGAACCATAAGCTTACAGCAACGGCTAAAGTTATTGTAAAAATCTGCGAACATGAAATGAATGAGATCGAGGTCTGTCCCGAGTGTTATCTCTCTGCCTGCCAGAAAAGGGACAACTGGTTTTGTGAACCATGTAGTAACCCTCATCCTCTGGTTTGGGCCAAGCTGAAGGGATTCCCGTTCTGGCCTGCCAAAGCTCTTCGTGACAAAGACGGACAAGTGGACGCACGTTTTTTTGGGCAGCATGACAGGGCCTGGGTTCCTATTAACAACTGCTACCTCATGTCCAAAGAGATCCCATTCTCTGTGAAGAAGACCAAGAGCATCTTCAACAGTGCCATGCAAGAGATGGAGGTGTACGTAGAAAACATTCGCAAAAAATTTGGAGTCTTTAATTATGCACCATTTCGCACGCCCTACACACCAGACAACCAGTTCCAGATGCTCCTGGACCCGGCGAACCCCAGCGCAGGCTCCGTCAAACCTGAAAAACAGGAAAAGATCAAGTTCAACTTTGATGTAACTGCATCTCCGAAGCTGCTTGTGGGAAAAAGCATGGTGTCCAGTGGGAGTGGGACAGGAAGACGAATCTCGATGACAGACATGCCGCGTTCACCTATGAGTACAAACTCTTCAGCGCATACTGGATCTGATGGAGAACAGGAGACGGCGGAGAAAGGTCACGCTAAAGCGGCTCTGCCCCATTACAGCACTGGGGAAGAGTCTCAGGATTGCACTGCATCACCTGCTTCTTCTAGAGCAGGAAGCACTTTAGAGAGTCCTAAACCATTTCACTCGCCTGCTCCCAACACCCCTGTTAAACAAGAGAAAACCCCAACCACCGGCAGCATACTCAACCTTAACCTTGATCGTAGTAAGGCGGAGATGGACTTGAAGGAGCTAAGTGAAAGTGTCCAGCAGCAGCAGGGGGCTCAGCCCTCCCTCACCTCCCCAAAGAGACAGATCAGAAGCCGCTTCCAGCTCAACCTGGACAAAACCATAGAGAGCTGCAAAGCACAGCTCGGCATAGATGAAATATCTGAGGACGTGTATAAAGGTGTAGAGCACAGCGATTCAGAAGAATCTGACAAGTCTGACTCCAGCGATAGTGAATATGGCAGCGAAGATGAACAGAAATCTAAGAATGGCCAGAATAACAAAACCACTGCTGAGGATAAAAAGGAGAAAGAGCCACCCAAGAAAAAGTCAAAACCATCAGCAGCTGCTGGTGAGGACAAAGACACCAGCAAAGAGTCTAGTGCAACGGCCAGTACAAAGGCCAAAGCAGAAACTGGTCAAAAAACAAGCACCCCTGACCTGATAGCTAAAGACAAATCAGGTATGGACTCGGAGAAAGAGCCTCCTGAGAAACTGAAAGCAGCTCCCGCATCCCCAGATGCCAGAGAAAAAGGCAAGAGCTCTGAAGAGGCCAGTCAGCCCGCATCGGTGGATGTAGACATGGACTCAGACTCTGAGAGGGAGCTGGTCATTGATCTGGGAGAAGAACAGGCAGGGAAGGAGAGGAAGAGGAGCAGGAAAGATTCAGCCGCTGTCACCGCACTCAAAGAACCAACAGCCTCCAAATCTGAAGGTAAAACAACGCCAATTACAAGTTCTCTCACCCAGCCTCAGAACACAGTCCTTTCCTCCTCTCCAACTATGAAAGACCCATCTCAATCCCCCATGGCCGTCCCCCTTAACATAATCCCCCTCACCGGAGCTGCGAGCAGCACCAGTCTGACCTCCTCCACTCTGCCCATAAGCACAGCCTCCACCGCCAGCAGCTCCTCGCCCATCAACACCAGCACAGTGAAGAAACAGCGGCCCTTACTGCCCAGGGAAACCGTACCTGTGGTGCAGCAGGCCGTCGTCTGGAACCCCTCCACTAAATTTCAGACGTCCAGTCAGAAGTGGCACATGCAGAAGGTGCAGAGACAGCAGCAGGGCCAAACACAGCCGGCCACACAGGCCCAGGTGTTGACGCAGGTGGAGCGCAACCAGCAGCCCCAACAGCAGGCACAGGTCTCCTCTTCCTCATCTGGACAGCAGGCTTCGTCCAGCACCAGATACCAAACACGACAGTCTATGAAAGTACAGAAAGACTCCTCTCACACCACCTCCACCTCTGCGGTCACACTGGTAACCAGCACACCGGTGTCGGCCACCATTATGGCAGGATCCACTGTCAGCTCTTCTTCAACATCAGCCACAGCTGGAGACTTCCAGATTCCCACCACCTCTGCAGACGTAGCGGCTGACATAGCCAAGTACACTAACAAAatCATGGATGCCATTAAAGGGACGATGAATGAGATTTATAATGATCTTACCAAGAGTACATCAGGAAACACAATAGCTGAGATTAGACGGTTGCGAATTGAAATTGAAAAACTGCAGTGGCTACATCAGCAAGAGCTGTCAGAGATGAAGCACAATTTagAACTAACCATGGCAGAGATGAGGCAGAGTCTCGAGCAGGAGCGAGAACGGATCGTAGCTGAGGTCAAGAAGCAGATGGAGATGGAAAAACAGCAGGCTGTGGATGAAACTAAAAAGAAGCAGTGGTGTGCAAACTGCAGAAAAGAGGCCATTTTCTACTGCTGTTGGAACACCAGCTACTGCGACTACCCCTGCCAGCAAGCACACTGGCCTGAGCACATGAAGTCCTGCACACAGTCTGCAACATCATCGCAGCAAGAACAAGAGTCAGAAGGCAGCACAGATGTTACTCCAAAGGCTCCCGGGCAGCCAAACAATGGACCCAACTCACCCAGAGAGACTGTATCTTCCACACCTGCAGACAAAGACAGTGAAGTGGATAAAGCCAAGGACAATGTCACTGTCACAATGTCCTAGCTCACATGTACAAAACACACACTACAACAGCACTTACATCTGTACAGCTGTACATAGATGTTGTCAAGCTCTTCATTACAAAGTCCTTTTAACTACGTTTGTCTTGTTTGAATGTACTTTTATGTTACGACTACGTCTGAATGTTCCAAATCTAAGACCACTCGATTATTTCTTGCTGTAGAACTGAGAGAGTTGTCAAGTTTATTTCTTTTGCGTATGTAAGGTCTGTTGACATTTTAGTTGGAGTCGCCaaagttatatttataatattgagAGCACCTAATCGTCTGAAATTTTTCCAGAATGAGTAAGCCAATAGTTTGTTCGGTCTGAAAAACTAGTACAGAATGTGGTTGCTTTTTATTTGTAGTATTATCAAGATCATTCACAGtggcaattttttttaatcttcattTCAGatcagaattttaatttttttttttttttgtattttaaagtacaGTACTGTGCTGGATTCTTAGAATATCTTATTTATGATAATTCATGCAAAGACCATTTGGTTATGAGACTACATTATATCTTGTCCATATTTCGCTTGGACAAGTAAACACTGTTtcaaaaaataagattattttcttGTTCTGGTTCGGTTGCGCGTCTCTGTGAAAAGAGAAAGGATGCAACAACatgttgaaaaatcttttatcaaAAATAGAAAAGAGTATTAAAAATCTGAGACAGGTTTCCGGTtatgtcttaaagggatagttcaaccaaaaataagaATTCTCTCATCATTTTCCCACCCTCTACCACTTGTTTTAAGCATGTAAGAGATTCTTTTGTTTGCTTATACACATAATAAACATGTACTAATAACAGAAATATGAACATACTTATGATTTACGAGGAACGACATGTTAAATGAATCATGTGATTACATCGTGGAAGAGCATCGAGTGGGATTGGTTCTTTGAAATGCACTGTTTGACTGAACTGATTTTGCTGGGGAAAATAGAAGTGCAGGGTGAGTAAACGGTAATTGAATTAGAATTTTTTTGGGTTGAACCATCTGTTTAAATGCCTTTCATTTTCGTTCACCTCTGAGATACTGTTGATGTTATAGTTTTGTCATCAGTAtcaattgtttttcatttgaatttGCCTTACAGTTGAAAATTCAATGTTGAACGACTATTGTTggtgtaaaaaatgtttttgtcatttgCGTCCTTCTTGATCTTTCAAAAGagctgaatattttttatttaaacactggccaattttacagatttttaaaaaaatctgattttaacATGACTGTAACTTCACAAATTCTGTATGTAATGTAAGAAGGtacttgtttaatgttttttatttttttttattttgcatatatcattcattttgatGCTGTATTCTTTGTGAGTGAAGAGCAGAGTCGTATGACCCCATAAGATACTGTATATGTGAACCACAAGCAGAAACATTCCTTTGTTATGCTGTTAATAGTGCATAAATATGTTATTCCAAACCATatacagaaaaagaaagaggatTTCTGTCTAATGAAGAACCAGTAGATGTTTAcatattgtatataaataaagatcTGGTGGTCTgaattgtaatttagtttttGTATGGTGCAAGTGTATTAAAGAGAACACCTGATGCAAACGTTTCAAACTGGAGTCCTACTTTAATGAGCGATTGAGATTACACTTGATGTCACTATTAAGCCTGTTAGGTGTAAATGTAATTCCTAAAAGTAGAGTTTTAGCTGAGGTAATCACTAATATTTAGTACATGCATTACTCCAACAACAAGTTGTATTCATACATATTCTGTCTATTCTAACTGTTAGAATTGCTGTCAAATCTCTTCACAGTGGTTAGCTCTGAAGGCAGCAAGGCACGTCTGAATCTGAGTCTGTGTAATATCTCTAATAATATGCACTGCTGGGGAATAATGTAGTTACATgtaacatattttattcattcattttcttgtcggct

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-041119-1 Predicted to enable metal ion binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Orthologous to human ZMYND8 (zinc finger MYND-type containing 8).

Ensembl:

ensembl_id ENSDART00000180565

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008464 lncRNA downstream 4653 18551830 ~ 18556014 (-) True XLOC_004088
TCONS_00008463 lncRNA downstream 10783 18547015 ~ 18549884 (-) False XLOC_004088
TCONS_00007789 lncRNA downstream 412179 18146659 ~ 18148488 (-) True XLOC_004082
TCONS_00007788 lncRNA downstream 413712 18144285 ~ 18146955 (-) False XLOC_004082
TCONS_00007784 lncRNA downstream 558388 17998053 ~ 18002279 (-) False XLOC_004081
TCONS_00008466 lncRNA upstream 247971 18849926 ~ 18852369 (-) False XLOC_004092
TCONS_00008465 lncRNA upstream 247971 18849926 ~ 18852369 (-) False XLOC_004092
TCONS_00008785 lncRNA upstream 248315 18850270 ~ 18852070 (-) False XLOC_004092
TCONS_00008784 lncRNA upstream 248315 18850270 ~ 18852070 (-) True XLOC_004092
TCONS_00008786 lncRNA upstream 486459 19088414 ~ 19091101 (-) True XLOC_004093
TCONS_00007798 mRNA downstream 2738 18531984 ~ 18557929 (-) False XLOC_004088
TCONS_00007797 mRNA downstream 2738 18531984 ~ 18557929 (-) False XLOC_004088
TCONS_00007796 mRNA downstream 2738 18531984 ~ 18557929 (-) False XLOC_004088
TCONS_00007799 mRNA downstream 3390 18545564 ~ 18557277 (-) False XLOC_004088
TCONS_00007795 mRNA downstream 92097 18395879 ~ 18468570 (-) False XLOC_004087
TCONS_00007804 mRNA upstream 102236 18704191 ~ 18705303 (-) True XLOC_004090
TCONS_00007805 mRNA upstream 182892 18784847 ~ 18800299 (-) False XLOC_004091
TCONS_00007806 mRNA upstream 183351 18785306 ~ 18799891 (-) False XLOC_004091
TCONS_00007807 mRNA upstream 184188 18786143 ~ 18791834 (-) False XLOC_004091
TCONS_00007808 mRNA upstream 184315 18786270 ~ 18799827 (-) False XLOC_004091
TCONS_00007777 other downstream 651985 17906902 ~ 17908682 (-) True XLOC_004078
TCONS_00007763 other downstream 1916154 16644397 ~ 16644513 (-) True XLOC_004067
TCONS_00007758 other downstream 2223781 16332824 ~ 16336886 (-) False XLOC_004066
TCONS_00007751 other downstream 2432989 16127382 ~ 16127678 (-) True XLOC_004063
TCONS_00007745 other downstream 2502360 16058191 ~ 16058307 (-) True XLOC_004059
TCONS_00007814 other upstream 578497 19180452 ~ 19180555 (-) True XLOC_004095
TCONS_00007815 other upstream 814223 19416178 ~ 19416315 (-) True XLOC_004096
TCONS_00007850 other upstream 2977971 21579926 ~ 21585161 (-) True XLOC_004113
TCONS_00007852 other upstream 3150520 21752475 ~ 21752589 (-) True XLOC_004115
TCONS_00007863 other upstream 3995159 22597114 ~ 22599555 (-) True XLOC_004120

Expression Profile

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