RNA id: XM_026941261.2


Basic Information

Item Value
RNA id XM_026941261.2
length 2867
RNA type mRNA
GC content 0.43
exon number 3
gene id crsp7
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 7582313 ~ 7598164 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttcccataatgcattgaGGAAACGTTTTGATCCAATTCGCTTCATGAAATCGGGGAGGCACTCACCGCTATGAAGCGAAAAGAAACGACAACTGGCGAATCTTCATTATTCGGCTGAAATGATTTAGGAGTTCTTAAGCTAACAGTGCATATAAGAAACATGCGGATAGGATACGACTCGAATATCCAGAAAGAGCTGTAGTTTCTGCAGTGTACGTACCCTTAAACTCGGAGGATTTTCCCCCGTCGGCCGCTTCGCCCCGACCAGGCAATGACAACGGCCTCCGCAACCCCGCAGCAGATGAGAGAGCGGCTGCTGCAGGCCATCGACAGCCAGAGCAATATCTGTAACATGGTTGCAGTCCTTGATGTTATCACCAATTTGGAGAAATATCCAATCACTAAAGAAGCACTTGAGGAAACTCGCTTGGGAAAGCTTATTAATGATGTCAGGAAGAAGACGAAAGACGAAGACCTTGCTAAACGTGCCAAGAAACTCCTTCGAAACTGGCAGAAACTGATTGAGCCCAGCCAAACTGACGCTTCTTCTCGAGGAGTGCAAGGCACCCCAGGCTCAGCCAATGGCAGTTCTCATCCGTGCCGAACAGATACGCCTCCAGCTGTTCCCCCACCCAGCAAAAAATCTCCAGAacttaaaaacagaaatgatgtTCACAACACTTACTCAGCTACAGCGGAAAAGTCTAGAAACCGAAAACACAGGGGGGACCAAAGGGATAGTCCACATCCGCCCactaaaatgcacaaaacattcaCGTATGGGCACACATTTTCTTCCACCCCTCCATCAAATGGATTTAGTGGCAGCCCTGAGCCTTTCGTAGAAAAACAAGATGATGCACCTTCTGATAGAAACTGCCCAGAGCATCTTGACaatgacaaacaaaacaaaatccctGTTAATGCTGTTAAGCCTCATCCAAGTTCTCCAGGGCTTACCAGACTCCCCAGCACTTCATCCTTACTCAAAACGtcagtgttacagcagcaatcAAGAACAGAAGGAGATGGAGGTGACAAACATTCAATCAGTAGCCCTCAATTCTCATTAAGTCCACATAGTGTAGCCCGTGAGACAGTGGCTAAGAGGTCTTCAGCTTATGCATCAAAAGGGACTCTGTCGAGCCCGTCTCATAATTCTGCCCAAGTGCCCTCTCTTTTGCCTTTAACCTCCCCAAATCAAATGTCTCATGCTGATGGTCGTCTAACTCTAGACCTATACGACTCGGTTCCCTTCAACAGATCTATTGAGAGAACCTCAGAATCCCTTCATAACAGTACAGCACAGGAGCCTTCAGAACTGTCCAGGCACAATTTCTCACCTGAGGTTCCTAAAGCTGGGTCAGAAAGTGTGACcttgaacaaaaaaagaaagaagtacaGGTCCAGGGACTACATGGTAAATCTTCAAGGCCAGTCCTCAGAGGACAGGACGAAGCCTGTGCGCTTAAAAGAGCGCAGATTGACTTTTGACCCAGTGACAGGACAAATCAAATCCCTCACTCCAAAGGAATCTCACCAGGAGGAGGAATGCCAGGGACCACCAGTTTTCGAACCTGCGAGGATCGAGACCCCCCAACAGAGGCCACCCACGACTGCTCAAAATCCTTTCCAGCAAACGAACTGGAAAGAGCTGTCCCGAAACGAGATCATTCAGTCCTACCTTAATCTTCAGAGCAATGTTCTGACTTCCTCTGGAGCCCAGACCCACGGTGCACACTTTTTCATGACTGAGTATTTGAAACAAGAGGAAAACGCTGTCAGAGAATCGAGGAAGACTCATGTTTTAGTCCCGAGCAGCTCGACTGCTGAACTACCGGGCATTAGTCGAGAGGTGACACATGAGGACCTTCACAGAATAGACAAAGAGCACTGGCCAGGAGTTAATGGCTGTTATGACACCAAGGGAAACTGGTATGATTGGACAGATTGTATATCTTTGGATTCTCATGGTGATGAGACCAAATTGAATATTCTGCCATATGTCTGCCTAGACTGAGAAAACAGCTCTGATGGCTTTTGGTTTTCATCGCCCCCACTgtgagttaaaaaaacaaagtcaGAACTTCTTTATATTCTGTACTGAAGTTTTCTGATACGTGGAGTGAAAAGGGGGCTCTTCggttttcttaaataaaaaaaggtaattAAATAGATGTCCTGTTTGTAATGTGCTGCTACCAACAAAAATTTGCAAACTCGATTTGTAAATGATGGCTCAGTCAGAGTAACTGGGCCGATTATTGCACAGTGTGTATAGGAGTCAGAGCACTAAGCAGTGCAGGTTGGAAAGCAAGTCAGAAACTTGTTTGGcagttacaaaaaaaagctttatgtGACTTAAAGaataaattatacttttttttatcatgtatgCATCTATTTATTTGACTTGATCATTTTTCCTACCAGAAGGTTTATCTGCCAAGATGTGCGAATATCTTTAAGGCTTTTCATcatcacatgtttttttttcttttcttttttgtttgtgatgGACATGCggtgtgtacatttttctgtctCGTGCTAAACAGTGCAGCCACCAACATTCCATATGTTACATTGTTCTCAGTTTATCCTGTGTATGTGATTTCCACGAGAGAGAAGAAAATCTATTTTTAGACATCTTGGATAAGAAATAATggaaatataatacatatatttgcTTAGATAATTATGCAAATATCAAAGAAataaagatgtttatttcacttcatGCCACAGTTGAAGAGTGGCAGCAGAGAGTGCGCCTCTCTTTATTTAAAGACAATGTTAAAATGCTGGAAATGTACTCGTTACCATTCCTTTAGATGTTGTTTGCCTTACtggacacaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K15169 MED26; mediator of RNA polymerase II transcription subunit 26

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU374657 lncRNA upstream 14245 7565086 ~ 7568068 (+) True G316339
TU374659 lncRNA upstream 14245 7565086 ~ 7568068 (+) False G316339
TU374628 lncRNA upstream 76909 7505079 ~ 7505404 (+) True G316317
TU374593 lncRNA upstream 148889 7426461 ~ 7433424 (+) True G316288
TU374285 lncRNA upstream 452436 7127691 ~ 7129877 (+) True G316000
XR_004580345.1 lncRNA downstream 50540 7648704 ~ 7650020 (+) True LOC117599993
TU374729 lncRNA downstream 72167 7670331 ~ 7670559 (+) True G316396
TU374730 lncRNA downstream 73126 7671290 ~ 7671520 (+) True G316397
TU374731 lncRNA downstream 73408 7671572 ~ 7671859 (+) True G316398
TU374738 lncRNA downstream 91213 7689377 ~ 7689965 (+) True G316405
XM_026941351.2 mRNA upstream 6933 7568121 ~ 7575380 (+) False LOC113543252
XM_026941352.2 mRNA upstream 6933 7568466 ~ 7575380 (+) True LOC113543252
XM_026941350.2 mRNA upstream 6933 7572897 ~ 7575380 (+) False LOC113543252
XM_026941284.2 mRNA upstream 27388 7553561 ~ 7554925 (+) True foxl2a
XM_026940815.2 mRNA upstream 77616 7500421 ~ 7504697 (+) True rbp2a
XM_026941265.2 mRNA downstream 5197 7603361 ~ 7612784 (+) True trnau1apb
XM_026941267.2 mRNA downstream 153530 7751694 ~ 7756961 (+) True fitm1
XM_026941263.2 mRNA downstream 260860 7859024 ~ 7881717 (+) True lrrc6
XM_034297738.1 mRNA downstream 285731 7883895 ~ 7935093 (+) True kcnq3
XM_026941259.2 mRNA downstream 285731 7883895 ~ 7935093 (+) False kcnq3
TU374286 other upstream 446812 7133459 ~ 7135501 (+) True G316001
XR_004580329.1 other upstream 637705 6937340 ~ 6944608 (+) False LOC113543138
TU373737 other upstream 1355073 6226717 ~ 6227240 (+) True G315581
TU373444 other upstream 1685483 5894504 ~ 5896830 (+) False shox2
trnat-agu_13 other upstream 2362695 5219545 ~ 5219618 (+) True trnat-agu_13
TU374748 other downstream 97370 7695534 ~ 7695919 (+) True G316413
TU375134 other downstream 665175 8263339 ~ 8264061 (+) True G316744
TU375135 other downstream 670545 8268709 ~ 8269198 (+) True G316745
TU375607 other downstream 1213793 8811957 ~ 8812820 (+) False LOC117599964
TU375892 other downstream 1814159 9412323 ~ 9415164 (+) True G317390

Expression Profile