RNA id: XM_026941350.2


Basic Information

Item Value
RNA id XM_026941350.2
length 1941
RNA type mRNA
GC content 0.39
exon number 2
gene id LOC113543252
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 7568121 ~ 7575380 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGGAAAAGCATACAATCCCCAGCAGTGGGCGTGGTTAGCTACACTATAAAGGAAAGTATGTCTGGAGTTTCATCAACCATTACAATGAGAGCATCAGAAAAAGAGTTTGTCATGCAGAACCCAGCCACTCAATGTTATGTTCTCTTTGCTTGGCTTGTCTTATTTAGTTCCAGTCTACGAGTATCCAGAGCCGTTCAGGATTATACAGGAACAAATCAAACTCTACAGATTGAGGCTCTTAAAACTAGTATGCTGGAGTACTTAGGGATGGACAGACCGCCACCATCTAGAGGAAAGTCGTCTTATCAGGAACTAATCAGAATATACCGTCAATATCAGAACATGAGGAGGGATATGCAGTCTTTTCAGAGTGGCTCCAGTTTCTTCCTTCATACCAcagTGCAGCCATTGAATTCTCAGCAGACTGGTCCTGAATCAGTGACTCAATGGTTCAGGGCTGTTTTTCACAGGGAGTCTCATATAACAGACGAGTTTCTCTTGGCACAAGCACAGCTGCGACTTCAAAGACCTCTGGATAACAATTTTGACCAACCACTGCACAATCAGAAAATTCTGGTTAGAATACACCTAACCTCCCATTCTTATATGAAGAAGGtgttttattcaaaaaaatttaaatcaagAGGCCACAATGTTACAATGGATGTGACTTTTGCAGTTAACCGATGGCTAGTGAAGACTAGTGATGTTTTACTAATTGCTGACATTGGCTTTGTTAGAAACAAAGAAGGTGAAACTGTACCCACTCCACAGGTCTGTTTGGAACTTAAGCTAATGGATGGTAAAGTGAGAAAACCTCGTTCCACTTATGGAGAAAGCTTTGAGGATGACAGCTACTGTGGTCGGAAGTCATTGAGTGTTTCCTTTGAGGAGATCGGCTGGTCAGACTGGATTGTGGCTCCTGCTGGCTACACAATGTACTTCTGTGATGGCTCTTGCCCACACAATTACAAACCAGCCAGTATGCACACTCAGATAAAGTCACGTCTACATCGATTGACCAAAGGAGCGACGCCTCGCCCATGTTGCGTGCCAGCAGACTATGAGCCCATGATTCTCATGCACTACGATAGCCGGGGAAAGCTGAAACTAACATCTTTCAATGATTTAATCGTTACCAAATGCCACTGTGCCTAAAGGTTTTAAGCCGGCTCATGGTTACAGTTTTGGGAAAAATTTTACTGTGCTGTTAAATTTCAAAAATGGTGCACAACAATGCTGTACACGGACATGGTTACATTTCTAACATTTCGCTGATGGGACTCTTCTTCCTTGAAGGAGAAAATTCACCTGGATACTCAGTattaaaagcaaagaaaagcCTTAGTTTCACATGTAgagtttaaattatttattataacttattaatgacattttgtaTTCTTGTCTTTTCTTATGTTATAGACGAGTAAACCATTTGTGTAAGTGATgcatttagtatttaaaaaacagtaacttgaataattttgttaaatgtaattaatttatttctactTGCTGCGTATTTACtatgtgaaatgttttaattttcctGTACATACTATTTTTGTCGAATCATTCTAATACCATTGTGTATAATGGCAGGCTTACGGAAGTGTATTCAGCAGATATTAAAGTAAACAATCTGTTATGATAATTTTTCAAGGTCAGGGAGTGCCAGTAATCAAAGATATGACACTCTTTTACAGTACAATAACCTTGAACATATATATTTCTACCCCATATGGCCTTGACTAACAAGGGAACCAACAAAGGTAAAGACAGAGAATGAAGCATGTCACTGTAGCCGATGTCACTGGAgctatacattttaatgaacaaaGAAAGTGAAAAGATCACTTTGAACCCATTTATTCAGAGTAGGCATTTTACAGAGACAATCACTTTAAGAAAGCAATAAAGATACAATGGAAACATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU374657 lncRNA upstream 4829 7565086 ~ 7568068 (+) True G316339
TU374659 lncRNA upstream 4829 7565086 ~ 7568068 (+) False G316339
TU374628 lncRNA upstream 67493 7505079 ~ 7505404 (+) True G316317
TU374593 lncRNA upstream 139473 7426461 ~ 7433424 (+) True G316288
TU374285 lncRNA upstream 443020 7127691 ~ 7129877 (+) True G316000
TU374677 lncRNA downstream 6952 7582332 ~ 7590920 (+) False crsp7
XR_004580345.1 lncRNA downstream 73324 7648704 ~ 7650020 (+) True LOC117599993
TU374729 lncRNA downstream 94951 7670331 ~ 7670559 (+) True G316396
TU374730 lncRNA downstream 95910 7671290 ~ 7671520 (+) True G316397
TU374731 lncRNA downstream 96192 7671572 ~ 7671859 (+) True G316398
XM_026941284.2 mRNA upstream 17972 7553561 ~ 7554925 (+) True foxl2a
XM_026940815.2 mRNA upstream 68200 7500421 ~ 7504697 (+) True rbp2a
XM_034297702.1 mRNA upstream 79078 7489370 ~ 7493819 (+) True LOC117595729
XM_034314654.1 mRNA upstream 82896 7470285 ~ 7490001 (+) False brwd1
XM_034314652.1 mRNA upstream 82937 7467350 ~ 7489960 (+) False brwd1
XM_026941261.2 mRNA downstream 6933 7582313 ~ 7598164 (+) True crsp7
XM_026941265.2 mRNA downstream 27981 7603361 ~ 7612784 (+) True trnau1apb
XM_026941267.2 mRNA downstream 176314 7751694 ~ 7756961 (+) True fitm1
XM_026941263.2 mRNA downstream 283644 7859024 ~ 7881717 (+) True lrrc6
XM_034297738.1 mRNA downstream 308515 7883895 ~ 7935093 (+) True kcnq3
TU374286 other upstream 437396 7133459 ~ 7135501 (+) True G316001
XR_004580329.1 other upstream 628289 6937340 ~ 6944608 (+) False LOC113543138
TU373737 other upstream 1345657 6226717 ~ 6227240 (+) True G315581
TU373444 other upstream 1676067 5894504 ~ 5896830 (+) False shox2
trnat-agu_13 other upstream 2353279 5219545 ~ 5219618 (+) True trnat-agu_13
TU374748 other downstream 120154 7695534 ~ 7695919 (+) True G316413
TU375134 other downstream 687959 8263339 ~ 8264061 (+) True G316744
TU375135 other downstream 693329 8268709 ~ 8269198 (+) True G316745
TU375607 other downstream 1236577 8811957 ~ 8812820 (+) False LOC117599964
TU375892 other downstream 1836943 9412323 ~ 9415164 (+) True G317390

Expression Profile