RNA id: TU380437


Basic Information

Item Value
RNA id TU380437
length 1917
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G321258
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16135324 ~ 16137604 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCACCAGGATACTAAGATACAATGTAGGCTCCAGTTATCCAGAGCGACACATCTTTGCCTCATGTGAGATTAAAACGAAGATGGTCTTAAGATATCCCCCAAAAGGAATATGCTTGCCTTATTTTTCTATACACCCGAAGCCGCGTAAAGAAACAAGGAGTTGCCAGCTAAATGATAGCGACCTGTGGGCTGAAGGTCACCTTTACTTTCCTTCTGATCATATGGAGTTACGGCAGGtgagaaaatgtgcaaaagaCGCTTTAATctgcaaaaatgtgcaaaagacGTGGTAATCTGCGAGTCCATGCTGGGATACCAGAACTTCCTAAACGCTCACTCAGAGGATTACTGTGGGATTAACCATTTCTGACCATTTGATccagtgttgccaactcttttcaggggaaaagTAGATAAGGCATCCTTTAAAAAGGCTCTAGGAGACGCCAAATGACGTCATATGCTAATTagtcatgatcatttgcatatcaaaacatgttacatgaagaaggaagattttctgaagacacttaGAACAGAAGCTCAGTTTTATTAAATCATAATAGATTAAAACTTACTTCTTACGCAAAgaagaattctttggtcatggTACCACTAAAGaactatttacacatttacaaaatactataatttctatccaaaacaaaaaacaacaacaacaaaaaaaaaaagcagtggtaGTAAGGGTTTGGGAAATAGACACAAAAGAAATGGTTATGGATGGAATAACTCACTTTCATTAATCTCgccaagaagagagtttaaaatgaagaacagaaAAGTGCATGGGTGGGACAAAtaatgctgatcactgattggtcattgggaacaatgctgatcaatGATTAGTTTTTGGGaccaatggtgatcagtgattggtcattgggaacaatggtgatcagtgattggctttTGGGaccaatggtgatcagtgattggtcgttgggaacaatggtgattggCTTTTGGGAACAATGACTCCCAGAAGAGCAACTCAGTCAGGTTTTAAACACTGGTGGTGAGTCGGCTGAACCTGCTCACTCAACTCATGTGCTGTGATGTGAACCGGGGAGCCGTATCAAGTGCCGAACAGTTGCACAACTtctgctcaaaaagtcactTGATTGTCGCTAGACCCTTTTAAAATAAGGTCTAAAAGGTCactaagttggcaacactgatTTGATCCACTGTTTAGCTTGGTGTtaagtaaaataatatattataggTACATGCAAgtgtattcatatttattcatttggtagATGTTTTTATCCAAAGAGAGTTGCAATTGAGCAGAGCAGATTAATGGCCCTGCAGTAGCTGTTTAGCAGTGCTAGGATTTGATCAAACAATCTTCTGATTATCAGCCCACAGCCTTAACTACTAAGCCATCACTTCCCCTCTTATGATTTCACATATTCATCCCTTCAACTGATTACCAAGTTATATGCTGTAAAGCAGCTGACTAATAGGCTTCATTCTAAAATAACCTGGCAGCAGAATATCGTatgactgaagatgaatttGACATACTGTGTTGGCACAGCTGTCACAAGACTGAGAATCAAATGTTAGCACATGCCTTACATATCACAGATTGTAAGATTTTTATTGTGGCCAGTCCTCTTTGAGATATGGACACGACTGCATCAGCTTATGTCATAAATATAATGTCAAGGAAGTGTcctaaatcaaattaaaaaaagtccaCCCCAAGTGCTTAGTTTGCCATTTAGGGCAAGAACATGAGTGGCAAGCCAGAGGAACTCCAAATGCTACTGGCCATATGCGGATATGTTCTATCATATTCACATATCAAACATCCTGAATGTCAGTACTCATACTGCGTAGGAAGGGCTAAGGAATGATAGAAGGTCAAGCACAAGAGAAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380433 lncRNA upstream 4319 16130730 ~ 16131005 (+) True G321256
TU380432 lncRNA upstream 4640 16130422 ~ 16130684 (+) True G321255
TU380431 lncRNA upstream 5055 16129949 ~ 16130269 (+) True G321254
TU380430 lncRNA upstream 5524 16129201 ~ 16129800 (+) True G321253
TU380423 lncRNA upstream 36323 16098615 ~ 16099001 (+) True G321247
XR_004580325.1 lncRNA downstream 48016 16185620 ~ 16187003 (+) True LOC117599979
TU380634 lncRNA downstream 248653 16386257 ~ 16386523 (+) True G321429
TU380639 lncRNA downstream 298595 16436199 ~ 16446124 (+) True G321434
TU380640 lncRNA downstream 318839 16456443 ~ 16457168 (+) True G321435
TU380660 lncRNA downstream 456593 16594197 ~ 16600593 (+) True G321454
XM_026925606.2 mRNA upstream 15291 16112035 ~ 16120033 (+) False si:ch211-178n15.1
XM_034314867.1 mRNA upstream 17979 16112036 ~ 16117345 (+) True si:ch211-178n15.1
XM_026925364.2 mRNA upstream 32882 16100533 ~ 16102442 (+) True jund
XM_026925672.2 mRNA upstream 93586 16039835 ~ 16041738 (+) True uba52
XM_034314914.1 mRNA upstream 97144 16028370 ~ 16038180 (+) True cers4b
XM_026925885.2 mRNA downstream 24850 16162454 ~ 16167346 (+) True cplx4c
XM_026925384.2 mRNA downstream 36966 16174570 ~ 16180499 (+) True rx2
XM_026925383.2 mRNA downstream 50385 16187989 ~ 16193122 (+) True calr3b
XM_026925167.2 mRNA downstream 59320 16196924 ~ 16223330 (+) True eps15l1b
XM_026925172.2 mRNA downstream 59320 16196924 ~ 16223330 (+) False eps15l1b
TU380434 other upstream 2960 16131335 ~ 16132364 (+) True G321257
XR_003403417.2 other upstream 15291 16112036 ~ 16120033 (+) False si:ch211-178n15.1
XR_004580319.1 other upstream 24235 16100533 ~ 16111089 (+) False jund
TU380359 other upstream 198556 15929952 ~ 15936768 (+) False gpx4b
TU380255 other upstream 264329 15869016 ~ 15870995 (+) True G321088
trnag-gcc_18 other downstream 46468 16184072 ~ 16184142 (+) True trnag-gcc_18
trnag-gcc_19 other downstream 47893 16185497 ~ 16185567 (+) True trnag-gcc_19
trnag-gcc_20 other downstream 49367 16186971 ~ 16187041 (+) True trnag-gcc_20
TU380835 other downstream 713841 16851445 ~ 16852424 (+) False LOC117599970
XR_004580277.1 other downstream 1341230 17478834 ~ 17483677 (+) False fuz

Expression Profile