RNA id: TU380423


Basic Information

Item Value
RNA id TU380423
length 387
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G321247
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16098615 ~ 16099001 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCTTTCTAGAATGTAATAAccgaaaataataaaattaaaatatgcgTAAACAGTTGACTAGCTCCTCAAGCTATCGTGCTTGGCAATAGACATCTCTCTACTCTGTTTAAATAGCCATCTAACCacaaatttgaaaaatattcacTGAATTGATTTGAGTGGCAGCCACAGATCATTAAAATCAGGCCCGCTGGCTCAGACCTGCATGACAACACGGAGAACAAAGATCTGGTTCAAACCTGTTTGCGTGAGTTGGTCTCAGAAAAACTCTGGGGCGTTTTAAGTCCTTGTGTTTTAGAGCGATGCCTTTGCAATTGTGGTATTCATATATTATAATCACCTCTGTTCTTCTTGGCCTTGGGCTCCACACATGTGTGTGAGTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380422 lncRNA upstream 1224 16096253 ~ 16097391 (+) True G321246
TU380421 lncRNA upstream 2386 16095903 ~ 16096229 (+) True G321245
TU380416 lncRNA upstream 4791 16091596 ~ 16093824 (+) True G321241
TU380414 lncRNA upstream 8216 16089606 ~ 16090399 (+) True G321239
TU380411 lncRNA upstream 29399 16069004 ~ 16069216 (+) True G321236
TU380430 lncRNA downstream 30200 16129201 ~ 16129800 (+) True G321253
TU380431 lncRNA downstream 30948 16129949 ~ 16130269 (+) True G321254
TU380432 lncRNA downstream 31421 16130422 ~ 16130684 (+) True G321255
TU380433 lncRNA downstream 31729 16130730 ~ 16131005 (+) True G321256
TU380437 lncRNA downstream 36323 16135324 ~ 16137604 (+) True G321258
XM_026925672.2 mRNA upstream 56877 16039835 ~ 16041738 (+) True uba52
XM_034314914.1 mRNA upstream 60435 16028370 ~ 16038180 (+) True cers4b
XM_026925779.2 mRNA upstream 99175 15992220 ~ 15999440 (+) True rab11bb
XM_034314824.1 mRNA upstream 114030 15938895 ~ 15984585 (+) False pip5k1cb
XM_026925364.2 mRNA downstream 1532 16100533 ~ 16102442 (+) True jund
XM_026925606.2 mRNA downstream 13034 16112035 ~ 16120033 (+) False si:ch211-178n15.1
XM_034314867.1 mRNA downstream 13035 16112036 ~ 16117345 (+) True si:ch211-178n15.1
XM_026925885.2 mRNA downstream 63453 16162454 ~ 16167346 (+) True cplx4c
XM_026925384.2 mRNA downstream 75569 16174570 ~ 16180499 (+) True rx2
TU380359 other upstream 161847 15929952 ~ 15936768 (+) False gpx4b
TU380255 other upstream 227620 15869016 ~ 15870995 (+) True G321088
TU379509 other upstream 1269844 14827265 ~ 14828771 (+) False ly97.3
XR_004580321.1 other upstream 2202950 13837433 ~ 13895665 (+) False LOC113533270
XR_004580319.1 other downstream 1532 16100533 ~ 16111089 (+) False jund
XR_003403417.2 other downstream 13035 16112036 ~ 16120033 (+) False si:ch211-178n15.1
TU380434 other downstream 32334 16131335 ~ 16132364 (+) True G321257
trnag-gcc_18 other downstream 85071 16184072 ~ 16184142 (+) True trnag-gcc_18
trnag-gcc_19 other downstream 86496 16185497 ~ 16185567 (+) True trnag-gcc_19

Expression Profile